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The map label for this gene is yhbY [H]

Identifier: 27365049

GI number: 27365049

Start: 1670889

End: 1671185

Strand: Reverse

Name: yhbY [H]

Synonym: VV1_1688

Alternate gene names: 27365049

Gene position: 1671185-1670889 (Counterclockwise)

Preceding gene: 326423874

Following gene: 27365047

Centisome position: 50.92

GC content: 43.1

Gene sequence:

>297_bases
ATGAACCTAAGCACCAAACAAAAGCAGCACCTAAAAGGCCTGGCTCACAGTTTAAAACCTGTTGTGCTAATGGGCGCAAA
TGGACTTACTGAAGCCGTGCTAGCCGAAATCGAAATCGCATTGGACTTTCACGAGCTGATCAAAATAAAGATCGCATCTG
AAGATCGTGAAACAAAATTGCTGATTGTTGATGCCATTGTGCGTGAAACTGGCGCAGAGAAAGTGCAAGTAATTGGTAAG
ACACTTGTACTTTATCGCCAATCTGAAGAGCGCAAGATTGAACTTCCTCGTAAGTAA

Upstream 100 bases:

>100_bases
AATAGGTCGTTCCTATTAATTAATAAATTATAGTCTTCAGCAATAGATGGCGTTAAAATAGGTTTTTTCAACCCTTAGTT
TAAATAAAAATGGCGGCGTA

Downstream 100 bases:

>100_bases
GTTAAGTGCTTCTTCTAGTCACAAAAGAAAGGTCGCCATTGGCGACCTTTTTGATGTGCGATTGATAGGAAATTATCGGT
ATTCAACGCTATCAATTTCA

Product: RNA binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 98; Mature: 98

Protein sequence:

>98_residues
MNLSTKQKQHLKGLAHSLKPVVLMGANGLTEAVLAEIEIALDFHELIKIKIASEDRETKLLIVDAIVRETGAEKVQVIGK
TLVLYRQSEERKIELPRK

Sequences:

>Translated_98_residues
MNLSTKQKQHLKGLAHSLKPVVLMGANGLTEAVLAEIEIALDFHELIKIKIASEDRETKLLIVDAIVRETGAEKVQVIGK
TLVLYRQSEERKIELPRK
>Mature_98_residues
MNLSTKQKQHLKGLAHSLKPVVLMGANGLTEAVLAEIEIALDFHELIKIKIASEDRETKLLIVDAIVRETGAEKVQVIGK
TLVLYRQSEERKIELPRK

Specific function: Unknown

COG id: COG1534

COG function: function code J; Predicted RNA-binding protein containing KH domain, possibly ribosomal protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CRM domain [H]

Homologues:

Organism=Escherichia coli, GI1789570, Length=97, Percent_Identity=82.4742268041237, Blast_Score=159, Evalue=3e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001890
- InterPro:   IPR017924
- ProDom:   PD010559 [H]

Pfam domain/function: PF01985 CRS1_YhbY [H]

EC number: NA

Molecular weight: Translated: 10997; Mature: 10997

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLSTKQKQHLKGLAHSLKPVVLMGANGLTEAVLAEIEIALDFHELIKIKIASEDRETKL
CCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCHHHHEEEEECCCCCCCEE
LIVDAIVRETGAEKVQVIGKTLVLYRQSEERKIELPRK
EEHHHHHHHCCHHHHHHHHHHHEEEECCCCCEECCCCC
>Mature Secondary Structure
MNLSTKQKQHLKGLAHSLKPVVLMGANGLTEAVLAEIEIALDFHELIKIKIASEDRETKL
CCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCHHHHEEEEECCCCCCCEE
LIVDAIVRETGAEKVQVIGKTLVLYRQSEERKIELPRK
EEHHHHHHHCCHHHHHHHHHHHEEEECCCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]