Click here to switch to the map view.

The map label for this gene is ompU

Identifier: 27365047

GI number: 27365047

Start: 1668792

End: 1669814

Strand: Reverse

Name: ompU

Synonym: VV1_1686

Alternate gene names: 27365047

Gene position: 1669814-1668792 (Counterclockwise)

Preceding gene: 27365049

Following gene: 27365046

Centisome position: 50.88

GC content: 44.97

Gene sequence:

>1023_bases
ATGAAAAAGACATTAATCGCACTTTCTGTATCTGCTGCTGCAGTGGCAACTGGTGTTAACGCTGCTGAACTTTACAACCA
AGATGGTACTTCTCTAGACATGGGTGGCCGTGCTGAAGCTCGCCTATCTATGAAAGATGGTAAAGTTGCAGACAACTCTC
GTATCCGTCTTAACTTCCTAGGTAAAGTAGAAATCCAAGACGGCCTATACGGCGTTGGTTTCTACGAAGGTGAATTCACT
ACTGCAGACAACGCTGATGGCAGCGATCTAGACAACCGTTACACTTACGCAGGTCTAGGTGGCAAGTTTGGTGAAGTGAC
TTACGGTAAAAACGATGGCGCTCTAGGTGTTATCACTGACTTCACCGATATCATGGCTTACCACGGTAACTCTGCGGCAG
ATAAAATCGCTGTTGCTGACCGCGTAGACAACATGATGTCTTACAAAGGCCAATTCGATGCACTAAGCGTGAAAGCAAGC
TACCGTTTTGCTGACCGTGCAGATTCAAGCAAGAATAATGTAGATAACACTTACATCGACAACGGTAAAGATGGCTACTC
TCTATCGGCTATCTACGCTATCGGCCAAACTGGTCTAACGCTTGGTGGTGGTTACGCAGATCAAGATAAGAGCAATGAAT
ACATGCTAGCGGCGTCTTACACTATGGGCGACCTGTACTTTGCAGGTGTATTTACTGATGGTGAAAAAGACTACGGCACA
AATGGTGACTATTCACACCGTGGTTTCTCTTCTGTAGAAGACTACACTGGTTATGAACTAGCGGCGAAATACACAATGGG
TCAAACTGTATTCACCACAACATACAACAATGCTGAAACTGATGGCTACACTTCAACTGATAACTTTGCCGTTGACGCAA
CCTACTACTTCAAACCTAACTTCCGTGGTTACGTATCATACAACTTCAACCTGCTAGACGCTGGTGACAAGATTGGTACA
TCAACTATCTCTAAAGCAGATGCAGAAGACGAGCTAGCACTAGGTCTACGTTACGACTTCTAA

Upstream 100 bases:

>100_bases
GATGCATCTCATTTATGAATCTAGAATCATAGTGATAATCTGTGAGATATTCGTCTCACAACAAAAAGATTATGGACAGC
TAAACTAGGACAACAAAACA

Downstream 100 bases:

>100_bases
TTTCAGCCTTGACTGAATCGCAAACGCCCGCAACTAGCGGGCGTTTTTTATCCTCGCTATAATCAAGCCATTCTAGATAG
ATTGGGTTGTCACTATGCGT

Product: outer membrane protein OmpU

Products: NA

Alternate protein names: Porin ompU

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MKKTLIALSVSAAAVATGVNAAELYNQDGTSLDMGGRAEARLSMKDGKVADNSRIRLNFLGKVEIQDGLYGVGFYEGEFT
TADNADGSDLDNRYTYAGLGGKFGEVTYGKNDGALGVITDFTDIMAYHGNSAADKIAVADRVDNMMSYKGQFDALSVKAS
YRFADRADSSKNNVDNTYIDNGKDGYSLSAIYAIGQTGLTLGGGYADQDKSNEYMLAASYTMGDLYFAGVFTDGEKDYGT
NGDYSHRGFSSVEDYTGYELAAKYTMGQTVFTTTYNNAETDGYTSTDNFAVDATYYFKPNFRGYVSYNFNLLDAGDKIGT
STISKADAEDELALGLRYDF

Sequences:

>Translated_340_residues
MKKTLIALSVSAAAVATGVNAAELYNQDGTSLDMGGRAEARLSMKDGKVADNSRIRLNFLGKVEIQDGLYGVGFYEGEFT
TADNADGSDLDNRYTYAGLGGKFGEVTYGKNDGALGVITDFTDIMAYHGNSAADKIAVADRVDNMMSYKGQFDALSVKAS
YRFADRADSSKNNVDNTYIDNGKDGYSLSAIYAIGQTGLTLGGGYADQDKSNEYMLAASYTMGDLYFAGVFTDGEKDYGT
NGDYSHRGFSSVEDYTGYELAAKYTMGQTVFTTTYNNAETDGYTSTDNFAVDATYYFKPNFRGYVSYNFNLLDAGDKIGT
STISKADAEDELALGLRYDF
>Mature_340_residues
MKKTLIALSVSAAAVATGVNAAELYNQDGTSLDMGGRAEARLSMKDGKVADNSRIRLNFLGKVEIQDGLYGVGFYEGEFT
TADNADGSDLDNRYTYAGLGGKFGEVTYGKNDGALGVITDFTDIMAYHGNSAADKIAVADRVDNMMSYKGQFDALSVKAS
YRFADRADSSKNNVDNTYIDNGKDGYSLSAIYAIGQTGLTLGGGYADQDKSNEYMLAASYTMGDLYFAGVFTDGEKDYGT
NGDYSHRGFSSVEDYTGYELAAKYTMGQTVFTTTYNNAETDGYTSTDNFAVDATYYFKPNFRGYVSYNFNLLDAGDKIGT
STISKADAEDELALGLRYDF

Specific function: Uptake Of Inorganic Phosphate, Phosphorylated Compounds, And Some Other Negatively Charged Solutes. [C]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family

Homologues:

Organism=Escherichia coli, GI1786436, Length=368, Percent_Identity=28.2608695652174, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787160, Length=371, Percent_Identity=25.6064690026954, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788544, Length=376, Percent_Identity=26.063829787234, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1787641, Length=367, Percent_Identity=27.2479564032698, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: 794 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): OMPU_VIBVU (Q8DBX0)

Other databases:

- EMBL:   AE016795
- RefSeq:   NP_760575.1
- ProteinModelPortal:   Q8DBX0
- SMR:   Q8DBX0
- GeneID:   1178599
- GenomeReviews:   AE016795_GR
- KEGG:   vvu:VV1_1686
- HOGENOM:   HBG673855
- OMA:   SANNFAV
- ProtClustDB:   CLSK874052
- BioCyc:   VVUL216895:VV1_1686-MONOMER
- InterPro:   IPR001702
- Gene3D:   G3DSA:2.40.160.10

Pfam domain/function: PF00267 Porin_1

EC number: NA

Molecular weight: Translated: 36754; Mature: 36754

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTLIALSVSAAAVATGVNAAELYNQDGTSLDMGGRAEARLSMKDGKVADNSRIRLNFL
CCCEEEEEEECHHHHHCCCCHHHHHCCCCCEECCCCCCEEEEEECCCCCCCCCEEEEEEE
GKVEIQDGLYGVGFYEGEFTTADNADGSDLDNRYTYAGLGGKFGEVTYGKNDGALGVITD
EEEEECCCEEEEEEECCEEECCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEC
FTDIMAYHGNSAADKIAVADRVDNMMSYKGQFDALSVKASYRFADRADSSKNNVDNTYID
HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEC
NGKDGYSLSAIYAIGQTGLTLGGGYADQDKSNEYMLAASYTMGDLYFAGVFTDGEKDYGT
CCCCCCEEEEEEEECCCCEEECCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCC
NGDYSHRGFSSVEDYTGYELAAKYTMGQTVFTTTYNNAETDGYTSTDNFAVDATYYFKPN
CCCCCCCCCCCCHHCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEEEEECCC
FRGYVSYNFNLLDAGDKIGTSTISKADAEDELALGLRYDF
CCEEEEEEEEEEECCCCCCCCHHCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MKKTLIALSVSAAAVATGVNAAELYNQDGTSLDMGGRAEARLSMKDGKVADNSRIRLNFL
CCCEEEEEEECHHHHHCCCCHHHHHCCCCCEECCCCCCEEEEEECCCCCCCCCEEEEEEE
GKVEIQDGLYGVGFYEGEFTTADNADGSDLDNRYTYAGLGGKFGEVTYGKNDGALGVITD
EEEEECCCEEEEEEECCEEECCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEC
FTDIMAYHGNSAADKIAVADRVDNMMSYKGQFDALSVKASYRFADRADSSKNNVDNTYID
HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEC
NGKDGYSLSAIYAIGQTGLTLGGGYADQDKSNEYMLAASYTMGDLYFAGVFTDGEKDYGT
CCCCCCEEEEEEEECCCCEEECCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCC
NGDYSHRGFSSVEDYTGYELAAKYTMGQTVFTTTYNNAETDGYTSTDNFAVDATYYFKPN
CCCCCCCCCCCCHHCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEEEEECCC
FRGYVSYNFNLLDAGDKIGTSTISKADAEDELALGLRYDF
CCEEEEEEEEEEECCCCCCCCHHCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA