| Definition | Vibrio vulnificus CMCP6 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_004459 |
| Length | 3,281,866 |
Click here to switch to the map view.
The map label for this gene is dacB [H]
Identifier: 27365046
GI number: 27365046
Start: 1667267
End: 1668697
Strand: Reverse
Name: dacB [H]
Synonym: VV1_1685
Alternate gene names: 27365046
Gene position: 1668697-1667267 (Counterclockwise)
Preceding gene: 27365047
Following gene: 27365045
Centisome position: 50.85
GC content: 46.61
Gene sequence:
>1431_bases ATGCGTTTTCTCGCTTCACTTTTCACATCGAGCTTTTGCTTCTTGCTTGCTACTTCTTCCACCATTCAGGCAGAAGAATA CTCACCGCTAAGCAACCTCCCAGATGGCAGTAGAAGCAGTATTTGGGTAGAAGACTTACAAAACCAAACCTCTTGGCAAA CCTTAGCGCAAAATACCCGTTTTTTCCCTCCAGCAAGCACACTCAAACTGGCCACCGCCCTAGCGGCCAAACTGGAACTT GAAGACGACTTTGCCTTCACCACCGAACTGTTAAGCAATGGCCGTGACATCAGCATTCGTTTCTCTGGCGATCCCACGCT TAAAACCGCACATTTAAAACAGCTTTTAGAAGCCTACAAGCAGCAGAATGGCGCGAACATTCGTGGAGACCTTTGGCTCG ATAACTCGGTGTTTACAGGCTATGAGCGCGCTGTGGGTTGGCCTTGGGATATTTTGGGTGTTTGCTACAGTGCTCCTTCA AGTGCCATCACATTAGATGAGAACTGCGCTCAGGCTTCTATTTACACATTGGCCGATGGCAATACTCGAGTTTACGTGCC AGAGCAGTACCCGATTCACGTCACAACCAATGCGAAAACCGTCTCTAAAGCGATCCAGCAGAGTAATCATTGCGACTTAG AGCTGTTGACGGGGGATAACAACCAATATCAATTGCAAGGCTGTCTGGTTGAGAGAGACAAACCGTTACCCCTTAAGTTC GCGATTCAAGACTCAACTCAATACACGAGTCGAACCTTATATACCTTGTTGAGACAGCTCAAAATTGAACTTGGTGGAGA AATTAAAATTGGCGTCATGCCGAACAAAGCCAATGTCATTGCCAGCCACTCTTCAGCTACCTTGCCAGAGTTATTAGACA CCATGTTAAAGGACTCTGATAATCTTATTGCCGACAACCTTACCAAAGCGATTGGGGCTCGCTTTTACTTGCAACCCGGT AGCTTTGCCAATGGCACTGAAGCGGTGAAACAGATCCTTTATTCCAAAGCGGGAATCGATCTTTCTCGCGCTCAACTCGC CGACGGTTCGGGCTTGTCGCGTAATAATCGAATCAACCCTATGGATATGATGTCGATCTTAAAATACATCTGGCAACACG ACAAAGAGCTCGGTTTAGTGGCATTAATGCCCAAATCCGGAGAGTCCGGCACCCTCAAGTACCGCCAAAGCATGCGCAGT GATCCAGTTAAAGGGCAGATCGTCGCTAAAAGTGGCTCACTTTATGGCAGCTATAATATGGCAGGATTTGTTTTAGATCA GAATGGACAGCCAAGCGCCGCCTTCATTCAATTTATTACCGATTACTACCCTGATAAAAGTGAAGAGAGTGGTAATGTTG CGCCTATCACACGCTTCGAGCGTGAGTTTTATCGAGACTTAGTTGAGTTTACACAAGTAAAACACAACTGA
Upstream 100 bases:
>100_bases TTCTAATTTCAGCCTTGACTGAATCGCAAACGCCCGCAACTAGCGGGCGTTTTTTATCCTCGCTATAATCAAGCCATTCT AGATAGATTGGGTTGTCACT
Downstream 100 bases:
>100_bases CGAAAAACAGCACAAGTTGCCATTTAAGCTAAACCCCAGCCATACTTGTTGATATTTGGCTGGGGAATATCATCATGAAA CATCACCCAATAAAAGACAA
Product: D-alanyl-D-alanine carboxypeptidase/endopeptidase
Products: NA
Alternate protein names: DD-carboxypeptidase; DD-peptidase; D-alanyl-D-alanine endopeptidase; DD-endopeptidase; Penicillin-binding protein 4; PBP-4 [H]
Number of amino acids: Translated: 476; Mature: 476
Protein sequence:
>476_residues MRFLASLFTSSFCFLLATSSTIQAEEYSPLSNLPDGSRSSIWVEDLQNQTSWQTLAQNTRFFPPASTLKLATALAAKLEL EDDFAFTTELLSNGRDISIRFSGDPTLKTAHLKQLLEAYKQQNGANIRGDLWLDNSVFTGYERAVGWPWDILGVCYSAPS SAITLDENCAQASIYTLADGNTRVYVPEQYPIHVTTNAKTVSKAIQQSNHCDLELLTGDNNQYQLQGCLVERDKPLPLKF AIQDSTQYTSRTLYTLLRQLKIELGGEIKIGVMPNKANVIASHSSATLPELLDTMLKDSDNLIADNLTKAIGARFYLQPG SFANGTEAVKQILYSKAGIDLSRAQLADGSGLSRNNRINPMDMMSILKYIWQHDKELGLVALMPKSGESGTLKYRQSMRS DPVKGQIVAKSGSLYGSYNMAGFVLDQNGQPSAAFIQFITDYYPDKSEESGNVAPITRFEREFYRDLVEFTQVKHN
Sequences:
>Translated_476_residues MRFLASLFTSSFCFLLATSSTIQAEEYSPLSNLPDGSRSSIWVEDLQNQTSWQTLAQNTRFFPPASTLKLATALAAKLEL EDDFAFTTELLSNGRDISIRFSGDPTLKTAHLKQLLEAYKQQNGANIRGDLWLDNSVFTGYERAVGWPWDILGVCYSAPS SAITLDENCAQASIYTLADGNTRVYVPEQYPIHVTTNAKTVSKAIQQSNHCDLELLTGDNNQYQLQGCLVERDKPLPLKF AIQDSTQYTSRTLYTLLRQLKIELGGEIKIGVMPNKANVIASHSSATLPELLDTMLKDSDNLIADNLTKAIGARFYLQPG SFANGTEAVKQILYSKAGIDLSRAQLADGSGLSRNNRINPMDMMSILKYIWQHDKELGLVALMPKSGESGTLKYRQSMRS DPVKGQIVAKSGSLYGSYNMAGFVLDQNGQPSAAFIQFITDYYPDKSEESGNVAPITRFEREFYRDLVEFTQVKHN >Mature_476_residues MRFLASLFTSSFCFLLATSSTIQAEEYSPLSNLPDGSRSSIWVEDLQNQTSWQTLAQNTRFFPPASTLKLATALAAKLEL EDDFAFTTELLSNGRDISIRFSGDPTLKTAHLKQLLEAYKQQNGANIRGDLWLDNSVFTGYERAVGWPWDILGVCYSAPS SAITLDENCAQASIYTLADGNTRVYVPEQYPIHVTTNAKTVSKAIQQSNHCDLELLTGDNNQYQLQGCLVERDKPLPLKF AIQDSTQYTSRTLYTLLRQLKIELGGEIKIGVMPNKANVIASHSSATLPELLDTMLKDSDNLIADNLTKAIGARFYLQPG SFANGTEAVKQILYSKAGIDLSRAQLADGSGLSRNNRINPMDMMSILKYIWQHDKELGLVALMPKSGESGTLKYRQSMRS DPVKGQIVAKSGSLYGSYNMAGFVLDQNGQPSAAFIQFITDYYPDKSEESGNVAPITRFEREFYRDLVEFTQVKHN
Specific function: Not involved in transpeptidation but exclusively catalyzes a DD-carboxypeptidase and DD-endopeptidase reaction [H]
COG id: COG2027
COG function: function code M; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S13 family [H]
Homologues:
Organism=Escherichia coli, GI1789573, Length=481, Percent_Identity=35.5509355509356, Blast_Score=317, Evalue=1e-87,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR000667 [H]
Pfam domain/function: PF02113 Peptidase_S13 [H]
EC number: =3.4.16.4 [H]
Molecular weight: Translated: 52869; Mature: 52869
Theoretical pI: Translated: 5.51; Mature: 5.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFLASLFTSSFCFLLATSSTIQAEEYSPLSNLPDGSRSSIWVEDLQNQTSWQTLAQNTR CHHHHHHHHHHEEEEEECCCCCCHHCCCCCCCCCCCCCCCEEHHHHCCCHHHHHHHHCCC FFPPASTLKLATALAAKLELEDDFAFTTELLSNGRDISIRFSGDPTLKTAHLKQLLEAYK CCCCHHHHHHHHHHHHHEECCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHH QQNGANIRGDLWLDNSVFTGYERAVGWPWDILGVCYSAPSSAITLDENCAQASIYTLADG HCCCCCCEEEEEECCCCCCCHHHHCCCCHHHHHHHHCCCCCEEEECCCCCCEEEEEEECC NTRVYVPEQYPIHVTTNAKTVSKAIQQSNHCDLELLTGDNNQYQLQGCLVERDKPLPLKF CEEEEECCCCCEEEECCHHHHHHHHHCCCCCCEEEEECCCCEEEEEEEEEECCCCCCEEE AIQDSTQYTSRTLYTLLRQLKIELGGEIKIGVMPNKANVIASHSSATLPELLDTMLKDSD EECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEECCCCCCHHHHHHHHHCCCC NLIADNLTKAIGARFYLQPGSFANGTEAVKQILYSKAGIDLSRAQLADGSGLSRNNRINP CHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCH MDMMSILKYIWQHDKELGLVALMPKSGESGTLKYRQSMRSDPVKGQIVAKSGSLYGSYNM HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCEEEEECCCEEECCCC AGFVLDQNGQPSAAFIQFITDYYPDKSEESGNVAPITRFEREFYRDLVEFTQVKHN EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRFLASLFTSSFCFLLATSSTIQAEEYSPLSNLPDGSRSSIWVEDLQNQTSWQTLAQNTR CHHHHHHHHHHEEEEEECCCCCCHHCCCCCCCCCCCCCCCEEHHHHCCCHHHHHHHHCCC FFPPASTLKLATALAAKLELEDDFAFTTELLSNGRDISIRFSGDPTLKTAHLKQLLEAYK CCCCHHHHHHHHHHHHHEECCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHH QQNGANIRGDLWLDNSVFTGYERAVGWPWDILGVCYSAPSSAITLDENCAQASIYTLADG HCCCCCCEEEEEECCCCCCCHHHHCCCCHHHHHHHHCCCCCEEEECCCCCCEEEEEEECC NTRVYVPEQYPIHVTTNAKTVSKAIQQSNHCDLELLTGDNNQYQLQGCLVERDKPLPLKF CEEEEECCCCCEEEECCHHHHHHHHHCCCCCCEEEEECCCCEEEEEEEEEECCCCCCEEE AIQDSTQYTSRTLYTLLRQLKIELGGEIKIGVMPNKANVIASHSSATLPELLDTMLKDSD EECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEECCCCCCHHHHHHHHHCCCC NLIADNLTKAIGARFYLQPGSFANGTEAVKQILYSKAGIDLSRAQLADGSGLSRNNRINP CHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCH MDMMSILKYIWQHDKELGLVALMPKSGESGTLKYRQSMRSDPVKGQIVAKSGSLYGSYNM HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCEEEEECCCEEECCCC AGFVLDQNGQPSAAFIQFITDYYPDKSEESGNVAPITRFEREFYRDLVEFTQVKHN EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]