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The map label for this gene is ydiK [C]

Identifier: 27365038

GI number: 27365038

Start: 1656381

End: 1657466

Strand: Reverse

Name: ydiK [C]

Synonym: VV1_1676

Alternate gene names: 27365038

Gene position: 1657466-1656381 (Counterclockwise)

Preceding gene: 161501822

Following gene: 27365037

Centisome position: 50.5

GC content: 45.4

Gene sequence:

>1086_bases
GTGCCAGAAAAAATTAAAATCAGCTCAAGCCACTGGGTGCTGATCGTCGCGTTGTTAGCCGCAGGGACTGCGTGCTACCT
GTTGGTCGAGCCTTATATAAACTCGATTATCATGGCGTTCATCATTTCCCTATTGATGTTTCCCATTCACGACTGGTTTG
AAAGCAAAATGCCCAAACATCGCAATATGGCGTCCTTGCTCTCTTGCGTTGTTTTAACCTTTATTATCGTTGTGCCTTTG
TTGTTTGTTTTTGCTGCCATTGTTCAGCAAGGGTCTGTTTTCTCGCAAAATACCTACCAGTGGGTGACACATGGCGGTAT
CCAGCAAGTGCTTGGTCATCCGTGGATTGTTAAAGGTCTAAAGCTGGTTAATGAGTACTTACCTTTTGACAATATTGACG
CCAAATCCATTGCAGAAAAAATTGGCCAACTCGCCACATCATTTGGTTCAAACTTGGTTGCCATCAGTGCAAAAATACTC
GGTGACGCGACCAACTTCCTGATGGATTTTTTCTTGATGCTGTTTGTGCTCTTTTTCTTATTGCGCGATCACGACAAAAT
CATCAGTGCGATTCGTCATATTCTGCCCTTATCGCGTAGCCAAGAAGATAAGCTGCTGAGTGAGATTGAAAATGTCTCTA
AATCTGCGGTAATGGGCTCTTTTCTCACCGCGATTGCACAAGGGATTGCCGGTGGTTTAGGGATGTGGCTTGCGGGCTTC
CCAGGGCTCTTCTGGGGCACCATGATGGGCTTTGCTTCCTTCATTCCCGTTGTCGGTACCGCGCTTATTTGGATCCCGGC
CACCATCTACTTGTTCTTAACCGGCGATACTGGTTGGGCTATCTTCCTTGCCATTTGGAGCATCGCTATTGTTGGCTCAA
TAGATAACTTACTAAGACCATTTTTAATGCAAGGCAGTGGCGGAATGAACACCTTGCTGATCTTCTTCTCCCTATTGGGA
GGGATTCAGTTATTTGGACTGATAGGTCTGATCTACGGGCCACTGATTTTTGCTATCACTATGGTGCTATTTAATATTTA
CGAGGAAGAGTTTAAGGGCTTCCTTGACCAGCAAGACAACAGCTAA

Upstream 100 bases:

>100_bases
TTTCTCATTATTACAACAACCCATAATCGCCCCATTGCGTTGATAAGCTTCGAGTTTCAGGTCATTATAGCCACAGACTG
CAACTAATTGGACTGTTACC

Downstream 100 bases:

>100_bases
CCAACACCACTACTTCAAGTCCTGGGCAGATTATGAGAAAATCTGCCCACTTTTTTCTAACTGACGCCACTTCATGTCTG
CCTATACTGCTCCTAGCCAA

Product: putative permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MPEKIKISSSHWVLIVALLAAGTACYLLVEPYINSIIMAFIISLLMFPIHDWFESKMPKHRNMASLLSCVVLTFIIVVPL
LFVFAAIVQQGSVFSQNTYQWVTHGGIQQVLGHPWIVKGLKLVNEYLPFDNIDAKSIAEKIGQLATSFGSNLVAISAKIL
GDATNFLMDFFLMLFVLFFLLRDHDKIISAIRHILPLSRSQEDKLLSEIENVSKSAVMGSFLTAIAQGIAGGLGMWLAGF
PGLFWGTMMGFASFIPVVGTALIWIPATIYLFLTGDTGWAIFLAIWSIAIVGSIDNLLRPFLMQGSGGMNTLLIFFSLLG
GIQLFGLIGLIYGPLIFAITMVLFNIYEEEFKGFLDQQDNS

Sequences:

>Translated_361_residues
MPEKIKISSSHWVLIVALLAAGTACYLLVEPYINSIIMAFIISLLMFPIHDWFESKMPKHRNMASLLSCVVLTFIIVVPL
LFVFAAIVQQGSVFSQNTYQWVTHGGIQQVLGHPWIVKGLKLVNEYLPFDNIDAKSIAEKIGQLATSFGSNLVAISAKIL
GDATNFLMDFFLMLFVLFFLLRDHDKIISAIRHILPLSRSQEDKLLSEIENVSKSAVMGSFLTAIAQGIAGGLGMWLAGF
PGLFWGTMMGFASFIPVVGTALIWIPATIYLFLTGDTGWAIFLAIWSIAIVGSIDNLLRPFLMQGSGGMNTLLIFFSLLG
GIQLFGLIGLIYGPLIFAITMVLFNIYEEEFKGFLDQQDNS
>Mature_360_residues
PEKIKISSSHWVLIVALLAAGTACYLLVEPYINSIIMAFIISLLMFPIHDWFESKMPKHRNMASLLSCVVLTFIIVVPLL
FVFAAIVQQGSVFSQNTYQWVTHGGIQQVLGHPWIVKGLKLVNEYLPFDNIDAKSIAEKIGQLATSFGSNLVAISAKILG
DATNFLMDFFLMLFVLFFLLRDHDKIISAIRHILPLSRSQEDKLLSEIENVSKSAVMGSFLTAIAQGIAGGLGMWLAGFP
GLFWGTMMGFASFIPVVGTALIWIPATIYLFLTGDTGWAIFLAIWSIAIVGSIDNLLRPFLMQGSGGMNTLLIFFSLLGG
IQLFGLIGLIYGPLIFAITMVLFNIYEEEFKGFLDQQDNS

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1787979, Length=336, Percent_Identity=25.8928571428571, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1788838, Length=193, Percent_Identity=28.4974093264249, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 39847; Mature: 39716

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEKIKISSSHWVLIVALLAAGTACYLLVEPYINSIIMAFIISLLMFPIHDWFESKMPKH
CCCCEEECCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RNMASLLSCVVLTFIIVVPLLFVFAAIVQQGSVFSQNTYQWVTHGGIQQVLGHPWIVKGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHCCHHHHHHH
KLVNEYLPFDNIDAKSIAEKIGQLATSFGSNLVAISAKILGDATNFLMDFFLMLFVLFFL
HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRDHDKIISAIRHILPLSRSQEDKLLSEIENVSKSAVMGSFLTAIAQGIAGGLGMWLAGF
HHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PGLFWGTMMGFASFIPVVGTALIWIPATIYLFLTGDTGWAIFLAIWSIAIVGSIDNLLRP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
FLMQGSGGMNTLLIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFKGFLDQQDN
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
S
C
>Mature Secondary Structure 
PEKIKISSSHWVLIVALLAAGTACYLLVEPYINSIIMAFIISLLMFPIHDWFESKMPKH
CCCEEECCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RNMASLLSCVVLTFIIVVPLLFVFAAIVQQGSVFSQNTYQWVTHGGIQQVLGHPWIVKGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHCCHHHHHHH
KLVNEYLPFDNIDAKSIAEKIGQLATSFGSNLVAISAKILGDATNFLMDFFLMLFVLFFL
HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRDHDKIISAIRHILPLSRSQEDKLLSEIENVSKSAVMGSFLTAIAQGIAGGLGMWLAGF
HHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PGLFWGTMMGFASFIPVVGTALIWIPATIYLFLTGDTGWAIFLAIWSIAIVGSIDNLLRP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
FLMQGSGGMNTLLIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFKGFLDQQDN
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]