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The map label for this gene is rsmC

Identifier: 27365037

GI number: 27365037

Start: 1655285

End: 1656307

Strand: Reverse

Name: rsmC

Synonym: VV1_1675

Alternate gene names: 27365037

Gene position: 1656307-1655285 (Counterclockwise)

Preceding gene: 27365038

Following gene: 27365036

Centisome position: 50.47

GC content: 47.21

Gene sequence:

>1023_bases
ATGTCTGCCTATACTGCTCCTAGCCAAATTGCCCAACGACAACTCGACTATTTCAACGGAAAGCACGTGCTCGTCGCAGG
GGAAGTTGAAGATTTGTTTCCACTCGAACTGGCTGAACACTGTGAATCGGTGAGTGTGTTCACGTCGAATTACAGCTATT
TCCGTCAAATTCGCGCCCATTCAACGATCACCAGCTACTTTGGCTCGCAACTTGAGGCAGATAGCCAAGCTGATCTCTTA
CTGCTTTACTGGCCAAAGGCAAAAGCAGAGGCGGAATATCTCCTCGCCATGCTGCTGGCTAAGTTGGGTTCTGGCTGCGA
AATTGTCGTGGTGGGTGAGAATCGCTCTGGTGTTAAAAGCATCGAAAAAATGTTCCAAGCGTATGGCCCCGTCAACAAGT
ACGATTCAGCTCGTCGCTGCTCCTTTTATTGGGGGCAATGCAACACGCAACCAAACGCCTTTAATCAAGCCGATTGGTTC
CGTCATTACTCCATCAATATTCACGGACAACAATTAGAGATTCAAAGCCTACCGGGTGTCTTTAGCCATGGCGAGTTTGA
TTTAGGCAGTCAATTACTGCTGGAAACGCTTCCCTCTTTAAGTGGCAAGGTGTTGGATTTTGGTTGTGGTGCTGGTGTTA
TTGGCGCATTCATGGCCAAGCGCAACCCAGCTATCGAACTCGAGATGTGTGACATCAATGCATACGCGTTAGCGTCAAGT
GAGGCAACTCTGGCAGCCAATGGTTTGCAAGGCCGCGTTTTCGCTTCAGACATCTACTCCGATACTGCTGATGACTATCG
TTTTATCATCTCTAACCCTCCATTTCACAGTGGTTTGGACACCAATTACAAAGCGGCTGAAACACTATTAGGCCAAGCGC
CACAGTATTTGAACAAGCAAGGCGAATTGATCATCGTAGCAAACAGCTTCCTCAAATACCCACCTATTATTGAGCAAGCA
TTCAGTAATTGCGCGACTCTAAATAAGACCAATAAGTTCTCGATATACCACGCCAGCAAATAA

Upstream 100 bases:

>100_bases
TTCCTTGACCAGCAAGACAACAGCTAACCAACACCACTACTTCAAGTCCTGGGCAGATTATGAGAAAATCTGCCCACTTT
TTTCTAACTGACGCCACTTC

Downstream 100 bases:

>100_bases
CGATTCTTCTGCAGCACAGCGTCTAACTGTGCTGCTTTTGCTCAATTTCCATCACCCATTCGATATTTTTGCGCCACTCT
CCACGAATTGATGACAACTT

Product: ribosomal RNA small subunit methyltransferase C

Products: NA

Alternate protein names: 16S rRNA m2G1207 methyltransferase; rRNA (guanine-N(2)-)-methyltransferase rsmC

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MSAYTAPSQIAQRQLDYFNGKHVLVAGEVEDLFPLELAEHCESVSVFTSNYSYFRQIRAHSTITSYFGSQLEADSQADLL
LLYWPKAKAEAEYLLAMLLAKLGSGCEIVVVGENRSGVKSIEKMFQAYGPVNKYDSARRCSFYWGQCNTQPNAFNQADWF
RHYSINIHGQQLEIQSLPGVFSHGEFDLGSQLLLETLPSLSGKVLDFGCGAGVIGAFMAKRNPAIELEMCDINAYALASS
EATLAANGLQGRVFASDIYSDTADDYRFIISNPPFHSGLDTNYKAAETLLGQAPQYLNKQGELIIVANSFLKYPPIIEQA
FSNCATLNKTNKFSIYHASK

Sequences:

>Translated_340_residues
MSAYTAPSQIAQRQLDYFNGKHVLVAGEVEDLFPLELAEHCESVSVFTSNYSYFRQIRAHSTITSYFGSQLEADSQADLL
LLYWPKAKAEAEYLLAMLLAKLGSGCEIVVVGENRSGVKSIEKMFQAYGPVNKYDSARRCSFYWGQCNTQPNAFNQADWF
RHYSINIHGQQLEIQSLPGVFSHGEFDLGSQLLLETLPSLSGKVLDFGCGAGVIGAFMAKRNPAIELEMCDINAYALASS
EATLAANGLQGRVFASDIYSDTADDYRFIISNPPFHSGLDTNYKAAETLLGQAPQYLNKQGELIIVANSFLKYPPIIEQA
FSNCATLNKTNKFSIYHASK
>Mature_339_residues
SAYTAPSQIAQRQLDYFNGKHVLVAGEVEDLFPLELAEHCESVSVFTSNYSYFRQIRAHSTITSYFGSQLEADSQADLLL
LYWPKAKAEAEYLLAMLLAKLGSGCEIVVVGENRSGVKSIEKMFQAYGPVNKYDSARRCSFYWGQCNTQPNAFNQADWFR
HYSINIHGQQLEIQSLPGVFSHGEFDLGSQLLLETLPSLSGKVLDFGCGAGVIGAFMAKRNPAIELEMCDINAYALASSE
ATLAANGLQGRVFASDIYSDTADDYRFIISNPPFHSGLDTNYKAAETLLGQAPQYLNKQGELIIVANSFLKYPPIIEQAF
SNCATLNKTNKFSIYHASK

Specific function: Specifically methylates the guanosine in position 1207 of 16S rRNA in the 30S particle

COG id: COG2813

COG function: function code J; 16S RNA G1207 methylase RsmC

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmC family

Homologues:

Organism=Escherichia coli, GI1790830, Length=341, Percent_Identity=42.8152492668622, Blast_Score=277, Evalue=6e-76,
Organism=Escherichia coli, GI87082206, Length=287, Percent_Identity=27.5261324041812, Blast_Score=101, Evalue=7e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RSMC_VIBVU (Q8DBY0)

Other databases:

- EMBL:   AE016795
- RefSeq:   NP_760565.1
- ProteinModelPortal:   Q8DBY0
- SMR:   Q8DBY0
- GeneID:   1178589
- GenomeReviews:   AE016795_GR
- KEGG:   vvu:VV1_1675
- HOGENOM:   HBG296757
- OMA:   RHCQLWQ
- ProtClustDB:   CLSK874045
- BioCyc:   VVUL216895:VV1_1675-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01862
- InterPro:   IPR002052
- InterPro:   IPR013675
- InterPro:   IPR007848

Pfam domain/function: PF05175 MTS; PF08468 MTS_N

EC number: =2.1.1.172

Molecular weight: Translated: 37596; Mature: 37465

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAYTAPSQIAQRQLDYFNGKHVLVAGEVEDLFPLELAEHCESVSVFTSNYSYFRQIRAH
CCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHH
STITSYFGSQLEADSQADLLLLYWPKAKAEAEYLLAMLLAKLGSGCEIVVVGENRSGVKS
HHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
IEKMFQAYGPVNKYDSARRCSFYWGQCNTQPNAFNQADWFRHYSINIHGQQLEIQSLPGV
HHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHEEEEEEEEECCEEEECCCCCC
FSHGEFDLGSQLLLETLPSLSGKVLDFGCGAGVIGAFMAKRNPAIELEMCDINAYALASS
CCCCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCEEEEEECCCEEEEECC
EATLAANGLQGRVFASDIYSDTADDYRFIISNPPFHSGLDTNYKAAETLLGQAPQYLNKQ
CCEEEECCCCCEEEEHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCHHHCCC
GELIIVANSFLKYPPIIEQAFSNCATLNKTNKFSIYHASK
CCEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCC
>Mature Secondary Structure 
SAYTAPSQIAQRQLDYFNGKHVLVAGEVEDLFPLELAEHCESVSVFTSNYSYFRQIRAH
CCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHH
STITSYFGSQLEADSQADLLLLYWPKAKAEAEYLLAMLLAKLGSGCEIVVVGENRSGVKS
HHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
IEKMFQAYGPVNKYDSARRCSFYWGQCNTQPNAFNQADWFRHYSINIHGQQLEIQSLPGV
HHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHEEEEEEEEECCEEEECCCCCC
FSHGEFDLGSQLLLETLPSLSGKVLDFGCGAGVIGAFMAKRNPAIELEMCDINAYALASS
CCCCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCEEEEEECCCEEEEECC
EATLAANGLQGRVFASDIYSDTADDYRFIISNPPFHSGLDTNYKAAETLLGQAPQYLNKQ
CCEEEECCCCCEEEEHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCHHHCCC
GELIIVANSFLKYPPIIEQAFSNCATLNKTNKFSIYHASK
CCEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA