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The map label for this gene is yfjD [H]

Identifier: 27364975

GI number: 27364975

Start: 1582394

End: 1583671

Strand: Reverse

Name: yfjD [H]

Synonym: VV1_1609

Alternate gene names: 27364975

Gene position: 1583671-1582394 (Counterclockwise)

Preceding gene: 27364976

Following gene: 326423853

Centisome position: 48.26

GC content: 46.32

Gene sequence:

>1278_bases
TTGGACGACATATCTACGGGTATCTTATTTGCGCTACTCGCGTGTCTTATCGTCATTTCAGGCTATTTCTCTGGTTCAGA
GACAGGGATGATGTCACTGAACCGATATCGCTTAAAGCACCTCGCCAATTCTGGGCACAAAGGGGCTAAGCGTGTCGAAA
AGTTACTGAGCCGCCCAGACCGATTAATTGGTTTGATTCTTATCGGTAACAACCTTGTCAATATTCTTGCCTCCGCCATT
GCGACCATTCTCGGCATGCGCCTTTATGGTGATTTGGGTGTTGCAATTGCAACCGGTGCCCTTACCTTAGTCGTTTTGGT
TTTTGCAGAAGTCACCCCTAAAACCGTGGCCGCACTCTATCCTGAACGAGTTTCATACGCGAGCAGCATTTTGCTGGTGG
TTTTGATGAAACTGCTTTCGCCTTTGGTGATGTTGGTGAATTTTATTACCAATGGTTTCATTCGCTTACTTGGTTTGAAA
GCGCAACACAACGGCGAAGACAATCTCAGCTCCGAAGAATTGCGTACCGTGGTAAACGAAGCGGGCAGCTTAATCCCCCA
GCGACACCAAGATATGCTGGTTTCCATTTTGGATTTAGAACACGTCACGGTGAATGACATCATGATCCCGCGTAATGAGA
TTACCGGCATTGATATCAATGACGATTGGAAATCCATTGTCCGTCAGCTGACTCACTCTCCTCATGGCCGCATTGTCTTG
TATCGCGACAAAATCGACGAAGCCGTTGGTATGTTAAGGTTACGAGAAGCGTATCGCTTGATGCTTGAGAAGAATGAGTT
CAACAAAGAGACCTTGCTACGAGCGGCAGATGAGGTCTATTTCATTCCCGAAAGCACCCCACTCAATGTTCAGCTACTCA
AGTTCCAACGCAATAAACAGCGCATCGGCCTGATTGTCGATGAATATGGCGATATTATCGGCCTAGTGACACTGGAAGAC
ATTCTAGAAGAGATCGTGGGTGAATTTACCACCTCGATTGCACCAAGCCTTTCAGATGAGATTACTCCGCAAGGCGACGG
CAGTTTCCTTATTGAAGGAAGCACCAACATCCGTGATATCAATAAAGGTTTGAAATGGAAACTGCCAACCGATGGTCCTA
GAACACTCAATGGCTTAATTTTGGAGCACTTAGAAGACATTCCAGAAAGCCACCTCAGTGTGAAAGTGGCCGGCCACGCG
ATGGAAATTGTGGAACTTGAAGAAAACCGAATTAAGTCGGTAAAAGTCTTTCCTAAGCGAAAACGCAAAACGACCTAA

Upstream 100 bases:

>100_bases
TCATACTGAGCTAAACCCATAATGTACTGTCATTTTTAGGACAGCTATAACGCGTAATAGCACTGTCATTTATCAGGATA
ACAAAAGGAAAATTTGAGTT

Downstream 100 bases:

>100_bases
CGGCATTAGCCCGACTTTACACCAAGGAATGAAAAGGCCCAGCGTGAACACTGGGCCTTTCTTTTTTTATGATGTTAGTA
CGCGATGGGTTAATCCACTT

Product: Hemolysin-like protein containing CBS domains

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MDDISTGILFALLACLIVISGYFSGSETGMMSLNRYRLKHLANSGHKGAKRVEKLLSRPDRLIGLILIGNNLVNILASAI
ATILGMRLYGDLGVAIATGALTLVVLVFAEVTPKTVAALYPERVSYASSILLVVLMKLLSPLVMLVNFITNGFIRLLGLK
AQHNGEDNLSSEELRTVVNEAGSLIPQRHQDMLVSILDLEHVTVNDIMIPRNEITGIDINDDWKSIVRQLTHSPHGRIVL
YRDKIDEAVGMLRLREAYRLMLEKNEFNKETLLRAADEVYFIPESTPLNVQLLKFQRNKQRIGLIVDEYGDIIGLVTLED
ILEEIVGEFTTSIAPSLSDEITPQGDGSFLIEGSTNIRDINKGLKWKLPTDGPRTLNGLILEHLEDIPESHLSVKVAGHA
MEIVELEENRIKSVKVFPKRKRKTT

Sequences:

>Translated_425_residues
MDDISTGILFALLACLIVISGYFSGSETGMMSLNRYRLKHLANSGHKGAKRVEKLLSRPDRLIGLILIGNNLVNILASAI
ATILGMRLYGDLGVAIATGALTLVVLVFAEVTPKTVAALYPERVSYASSILLVVLMKLLSPLVMLVNFITNGFIRLLGLK
AQHNGEDNLSSEELRTVVNEAGSLIPQRHQDMLVSILDLEHVTVNDIMIPRNEITGIDINDDWKSIVRQLTHSPHGRIVL
YRDKIDEAVGMLRLREAYRLMLEKNEFNKETLLRAADEVYFIPESTPLNVQLLKFQRNKQRIGLIVDEYGDIIGLVTLED
ILEEIVGEFTTSIAPSLSDEITPQGDGSFLIEGSTNIRDINKGLKWKLPTDGPRTLNGLILEHLEDIPESHLSVKVAGHA
MEIVELEENRIKSVKVFPKRKRKTT
>Mature_425_residues
MDDISTGILFALLACLIVISGYFSGSETGMMSLNRYRLKHLANSGHKGAKRVEKLLSRPDRLIGLILIGNNLVNILASAI
ATILGMRLYGDLGVAIATGALTLVVLVFAEVTPKTVAALYPERVSYASSILLVVLMKLLSPLVMLVNFITNGFIRLLGLK
AQHNGEDNLSSEELRTVVNEAGSLIPQRHQDMLVSILDLEHVTVNDIMIPRNEITGIDINDDWKSIVRQLTHSPHGRIVL
YRDKIDEAVGMLRLREAYRLMLEKNEFNKETLLRAADEVYFIPESTPLNVQLLKFQRNKQRIGLIVDEYGDIIGLVTLED
ILEEIVGEFTTSIAPSLSDEITPQGDGSFLIEGSTNIRDINKGLKWKLPTDGPRTLNGLILEHLEDIPESHLSVKVAGHA
MEIVELEENRIKSVKVFPKRKRKTT

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=410, Percent_Identity=23.4146341463415, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI94681046, Length=328, Percent_Identity=25.9146341463415, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI40068055, Length=341, Percent_Identity=25.5131964809384, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI40068053, Length=341, Percent_Identity=25.5131964809384, Blast_Score=70, Evalue=4e-12,
Organism=Escherichia coli, GI145693175, Length=398, Percent_Identity=65.3266331658292, Blast_Score=555, Evalue=1e-159,
Organism=Escherichia coli, GI1790664, Length=423, Percent_Identity=25.2955082742317, Blast_Score=152, Evalue=5e-38,
Organism=Escherichia coli, GI87082033, Length=279, Percent_Identity=27.2401433691756, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1786879, Length=269, Percent_Identity=25.2788104089219, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1788119, Length=270, Percent_Identity=27.037037037037, Blast_Score=80, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6324512, Length=349, Percent_Identity=24.6418338108883, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 47271; Mature: 47271

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDISTGILFALLACLIVISGYFSGSETGMMSLNRYRLKHLANSGHKGAKRVEKLLSRPD
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
RLIGLILIGNNLVNILASAIATILGMRLYGDLGVAIATGALTLVVLVFAEVTPKTVAALY
CEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
PERVSYASSILLVVLMKLLSPLVMLVNFITNGFIRLLGLKAQHNGEDNLSSEELRTVVNE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
AGSLIPQRHQDMLVSILDLEHVTVNDIMIPRNEITGIDINDDWKSIVRQLTHSPHGRIVL
HHCCCCHHHHHHHHHHHHHCCEEECCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEE
YRDKIDEAVGMLRLREAYRLMLEKNEFNKETLLRAADEVYFIPESTPLNVQLLKFQRNKQ
ECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEECCCCCCCCEEEEEECCCCC
RIGLIVDEYGDIIGLVTLEDILEEIVGEFTTSIAPSLSDEITPQGDGSFLIEGSTNIRDI
CCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCHHHH
NKGLKWKLPTDGPRTLNGLILEHLEDIPESHLSVKVAGHAMEIVELEENRIKSVKVFPKR
CCCCEEECCCCCCHHHHHHHHHHHHHCCHHHCEEEECCCEEEEEEECHHHCCEEEECCCC
KRKTT
CCCCC
>Mature Secondary Structure
MDDISTGILFALLACLIVISGYFSGSETGMMSLNRYRLKHLANSGHKGAKRVEKLLSRPD
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
RLIGLILIGNNLVNILASAIATILGMRLYGDLGVAIATGALTLVVLVFAEVTPKTVAALY
CEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
PERVSYASSILLVVLMKLLSPLVMLVNFITNGFIRLLGLKAQHNGEDNLSSEELRTVVNE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
AGSLIPQRHQDMLVSILDLEHVTVNDIMIPRNEITGIDINDDWKSIVRQLTHSPHGRIVL
HHCCCCHHHHHHHHHHHHHCCEEECCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEE
YRDKIDEAVGMLRLREAYRLMLEKNEFNKETLLRAADEVYFIPESTPLNVQLLKFQRNKQ
ECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEECCCCCCCCEEEEEECCCCC
RIGLIVDEYGDIIGLVTLEDILEEIVGEFTTSIAPSLSDEITPQGDGSFLIEGSTNIRDI
CCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCHHHH
NKGLKWKLPTDGPRTLNGLILEHLEDIPESHLSVKVAGHAMEIVELEENRIKSVKVFPKR
CCCCEEECCCCCCHHHHHHHHHHHHHCCHHHCEEEECCCEEEEEEECHHHCCEEEECCCC
KRKTT
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 3045760 [H]