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The map label for this gene is psd [H]

Identifier: 27364684

GI number: 27364684

Start: 1268955

End: 1269812

Strand: Reverse

Name: psd [H]

Synonym: VV1_1284

Alternate gene names: 27364684

Gene position: 1269812-1268955 (Counterclockwise)

Preceding gene: 27364685

Following gene: 27364683

Centisome position: 38.69

GC content: 48.95

Gene sequence:

>858_bases
ATGGATAAGATTAAAGTTGGACTGCAGTACTGGATCCCACAACATGGCCTGACTCGCCTAGTGGGTAAATTGGCTTCCGC
CAAAGCAGGCAGCCTGACCACAGCGATCATTCGCTGGTTTATCAAGCAGTACAACGTCAATATGGATGAAGCGAAACACG
CCGATCCTAAACACTACAAGACGTTCAATGAGTTCTTTGTGCGTGAGCTAAAAGAAGGCGCACGTCCAATTGCTGAAGGT
GATGCGATCATTACCCACCCAGCGGATGCTTGTGTCAGCCAGTTTGGCCCTATTACCAACGGCCAATTGATTCAAGCGAA
AGGGCATGACTTCTCCGCTCAAGAGCTGTTAGGCGGTGATGCTGCTCTTGCTGAAGAATTTAAAGACGGTAGCTTCGCGA
CGTTGTATCTGTCACCTCGTGATTACCACCGTGTACACATGCCATGCGATGGTACTCTGCGCCAAATGATTTACGTTCCT
GGTGATCTTTTCTCGGTGAATCCTCTGACAGCAGAGAATGTACCCAACCTATTTGCTCGCAATGAGCGCGTGGTGTGTAT
CTTTGATACTGAGTTTGGTCCTATGGCTCAAGTGCTTGTTGGTGCGACCATTGTTGGCAGTATTGAACAAGTATGGGCGG
GTACCATTACCCCACCTCGTGGCAATACGGTATACAAATGGGATTATCCTGCTTCTGGTAACCATGCGGTTATCTTGAAG
AAGGGCGAAGAAATGGGTCGCTTCAAACTCGGATCAACCGTCATTAACCTTTTTGCCAAAGACGCGATTCGCTTTGATGA
GTCGATGGCCAATGGCCAACCAACGGTAATGGGCACCCCATACGCCCACCAGCAATAA

Upstream 100 bases:

>100_bases
GTTGTGTAAGTTTTCGTCACCGATTACTGACAAGTGGAATAATTTTCAGTAACATCACGCGCCCGAAACAAGAATCAAAC
AGACATCATCGGTATTTATA

Downstream 100 bases:

>100_bases
GTTTATTTTTAGCCCCAACAACCGTTGGGGCTTTTTCTTGACGAAAAACAAAACTCTTCATAAAAAATCAACGGAATTCA
GAAACTTCAACCCGCCTCTA

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MDKIKVGLQYWIPQHGLTRLVGKLASAKAGSLTTAIIRWFIKQYNVNMDEAKHADPKHYKTFNEFFVRELKEGARPIAEG
DAIITHPADACVSQFGPITNGQLIQAKGHDFSAQELLGGDAALAEEFKDGSFATLYLSPRDYHRVHMPCDGTLRQMIYVP
GDLFSVNPLTAENVPNLFARNERVVCIFDTEFGPMAQVLVGATIVGSIEQVWAGTITPPRGNTVYKWDYPASGNHAVILK
KGEEMGRFKLGSTVINLFAKDAIRFDESMANGQPTVMGTPYAHQQ

Sequences:

>Translated_285_residues
MDKIKVGLQYWIPQHGLTRLVGKLASAKAGSLTTAIIRWFIKQYNVNMDEAKHADPKHYKTFNEFFVRELKEGARPIAEG
DAIITHPADACVSQFGPITNGQLIQAKGHDFSAQELLGGDAALAEEFKDGSFATLYLSPRDYHRVHMPCDGTLRQMIYVP
GDLFSVNPLTAENVPNLFARNERVVCIFDTEFGPMAQVLVGATIVGSIEQVWAGTITPPRGNTVYKWDYPASGNHAVILK
KGEEMGRFKLGSTVINLFAKDAIRFDESMANGQPTVMGTPYAHQQ
>Mature_285_residues
MDKIKVGLQYWIPQHGLTRLVGKLASAKAGSLTTAIIRWFIKQYNVNMDEAKHADPKHYKTFNEFFVRELKEGARPIAEG
DAIITHPADACVSQFGPITNGQLIQAKGHDFSAQELLGGDAALAEEFKDGSFATLYLSPRDYHRVHMPCDGTLRQMIYVP
GDLFSVNPLTAENVPNLFARNERVVCIFDTEFGPMAQVLVGATIVGSIEQVWAGTITPPRGNTVYKWDYPASGNHAVILK
KGEEMGRFKLGSTVINLFAKDAIRFDESMANGQPTVMGTPYAHQQ

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=301, Percent_Identity=32.2259136212625, Blast_Score=130, Evalue=9e-31,
Organism=Escherichia coli, GI1790604, Length=283, Percent_Identity=57.9505300353357, Blast_Score=343, Evalue=6e-96,
Organism=Caenorhabditis elegans, GI71980840, Length=283, Percent_Identity=32.1554770318021, Blast_Score=121, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI71980843, Length=283, Percent_Identity=32.1554770318021, Blast_Score=121, Evalue=4e-28,
Organism=Saccharomyces cerevisiae, GI6321609, Length=245, Percent_Identity=31.4285714285714, Blast_Score=118, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6324160, Length=145, Percent_Identity=40, Blast_Score=89, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24649526, Length=303, Percent_Identity=30.6930693069307, Blast_Score=119, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24649528, Length=303, Percent_Identity=30.6930693069307, Blast_Score=119, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24649524, Length=303, Percent_Identity=30.6930693069307, Blast_Score=119, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 31486; Mature: 31486

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKIKVGLQYWIPQHGLTRLVGKLASAKAGSLTTAIIRWFIKQYNVNMDEAKHADPKHYK
CCCEEECCEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCHHHH
TFNEFFVRELKEGARPIAEGDAIITHPADACVSQFGPITNGQLIQAKGHDFSAQELLGGD
HHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHCCCCCCCEEEEECCCCCCHHHHHCCC
AALAEEFKDGSFATLYLSPRDYHRVHMPCDGTLRQMIYVPGDLFSVNPLTAENVPNLFAR
HHHHHHHCCCCEEEEEECCCCCEEEECCCCHHHHHEEECCCCEEECCCCCCCCCCHHHHC
NERVVCIFDTEFGPMAQVLVGATIVGSIEQVWAGTITPPRGNTVYKWDYPASGNHAVILK
CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEEE
KGEEMGRFKLGSTVINLFAKDAIRFDESMANGQPTVMGTPYAHQQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCC
>Mature Secondary Structure
MDKIKVGLQYWIPQHGLTRLVGKLASAKAGSLTTAIIRWFIKQYNVNMDEAKHADPKHYK
CCCEEECCEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCHHHH
TFNEFFVRELKEGARPIAEGDAIITHPADACVSQFGPITNGQLIQAKGHDFSAQELLGGD
HHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHCCCCCCCEEEEECCCCCCHHHHHCCC
AALAEEFKDGSFATLYLSPRDYHRVHMPCDGTLRQMIYVPGDLFSVNPLTAENVPNLFAR
HHHHHHHCCCCEEEEEECCCCCEEEECCCCHHHHHEEECCCCEEECCCCCCCCCCHHHHC
NERVVCIFDTEFGPMAQVLVGATIVGSIEQVWAGTITPPRGNTVYKWDYPASGNHAVILK
CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEEE
KGEEMGRFKLGSTVINLFAKDAIRFDESMANGQPTVMGTPYAHQQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA