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The map label for this gene is yhcC [H]

Identifier: 27364014

GI number: 27364014

Start: 555804

End: 556760

Strand: Reverse

Name: yhcC [H]

Synonym: VV1_0552

Alternate gene names: 27364014

Gene position: 556760-555804 (Counterclockwise)

Preceding gene: 27364025

Following gene: 27364013

Centisome position: 16.96

GC content: 49.01

Gene sequence:

>957_bases
ATGCAATTACATGAGCTAGTGAATACGATTGGTCAGGATCTTCAGCGTCGATATGGAGAAAAAGTGCATAAATTGACGCT
TCATGGAGGGTTTAGCTGTCCAAATCGTGATGGCACGATCGGCCGTGGTGGTTGTACTTTCTGCAATGTGGCGTCGTTCG
CTGATGAGCAAGCTCAAGTCAAAAGTATTCGAGAGCAATTGACCGAACGAGCGGGAGAGGTGCATCGCGCGAAGAAGTAC
TTAGCCTATTTTCAAGCTTACACCAGCACCTATGCTGAAGTGCAGGTGCTGAAAAACATGTATGAAGAGGCGTTGAAAGC
CGCGGATATTGTCGGTCTTTGTGTCGGGACTCGCCCAGATTGTGTGCCAGATGCGGTATTAGACTTGCTCTCGGATTACG
TGCAGCAAGGTTATGAAATTTGGCTGGAGTTGGGGCTGCAAACGGCCAGCAATAGCACCTTGAAGCGGATCAATCGTGGA
CACGATTTTGAATGCTATGCAGAGATCACTCAGCGAGCCCGTGCCTTGGGCATCAAAGTATGTACGCATTTGATCGTTGG
GTTACCAAAAGAGTCTCGAGACGATAACTTCGCCACCTTAGAAAAAGTGATTGAGGTCGGTGCGGATGGCATCAAGTTAC
ACGGTTTGCATATTGTTGAAGGCAGTACCATGGCCAAAGCTTGGCGTGCGGGTAAGTTGGATGCACCAGAATTGGAGCAA
TATGTCGAGATTGCCTGCGAAATGATTCGCCGAACACCGCCAGAGGTGATTTTCCACCGAGTCTCTTCAGCCGCTCGTCG
TCCGACATTGCTATCGCCTTTATGGTGTGAAAATCGCTGGTTAGCCATGACTGCAATCGGTCAATACCTTGCTCAGCATG
GCGGACAGGGCAGTGCGCTTGGCCATTCTTTTGTCTATACTAAACCGCAATTAAAATGCGGAATTCACCCTCAATAG

Upstream 100 bases:

>100_bases
GTTTGAATTCACTAAAATTTTGTGTTTTTTCTTGCAGGTGTGTAATTAATTTACATAAACCGTAGTGAGATTGATTGCGG
TTTACAATTGGTGGTTTTCA

Downstream 100 bases:

>100_bases
TTGGTATAGTCGCCGCACACACAATTCATCTAAGAGTGAGAATGGACAAGCAGTTTGCATGGATAGCACACCTCGCAGAG
CATTACGGCGCGATTATTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MQLHELVNTIGQDLQRRYGEKVHKLTLHGGFSCPNRDGTIGRGGCTFCNVASFADEQAQVKSIREQLTERAGEVHRAKKY
LAYFQAYTSTYAEVQVLKNMYEEALKAADIVGLCVGTRPDCVPDAVLDLLSDYVQQGYEIWLELGLQTASNSTLKRINRG
HDFECYAEITQRARALGIKVCTHLIVGLPKESRDDNFATLEKVIEVGADGIKLHGLHIVEGSTMAKAWRAGKLDAPELEQ
YVEIACEMIRRTPPEVIFHRVSSAARRPTLLSPLWCENRWLAMTAIGQYLAQHGGQGSALGHSFVYTKPQLKCGIHPQ

Sequences:

>Translated_318_residues
MQLHELVNTIGQDLQRRYGEKVHKLTLHGGFSCPNRDGTIGRGGCTFCNVASFADEQAQVKSIREQLTERAGEVHRAKKY
LAYFQAYTSTYAEVQVLKNMYEEALKAADIVGLCVGTRPDCVPDAVLDLLSDYVQQGYEIWLELGLQTASNSTLKRINRG
HDFECYAEITQRARALGIKVCTHLIVGLPKESRDDNFATLEKVIEVGADGIKLHGLHIVEGSTMAKAWRAGKLDAPELEQ
YVEIACEMIRRTPPEVIFHRVSSAARRPTLLSPLWCENRWLAMTAIGQYLAQHGGQGSALGHSFVYTKPQLKCGIHPQ
>Mature_318_residues
MQLHELVNTIGQDLQRRYGEKVHKLTLHGGFSCPNRDGTIGRGGCTFCNVASFADEQAQVKSIREQLTERAGEVHRAKKY
LAYFQAYTSTYAEVQVLKNMYEEALKAADIVGLCVGTRPDCVPDAVLDLLSDYVQQGYEIWLELGLQTASNSTLKRINRG
HDFECYAEITQRARALGIKVCTHLIVGLPKESRDDNFATLEKVIEVGADGIKLHGLHIVEGSTMAKAWRAGKLDAPELEQ
YVEIACEMIRRTPPEVIFHRVSSAARRPTLLSPLWCENRWLAMTAIGQYLAQHGGQGSALGHSFVYTKPQLKCGIHPQ

Specific function: Unknown

COG id: COG1242

COG function: function code R; Predicted Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ0486 [H]

Homologues:

Organism=Escherichia coli, GI2367204, Length=305, Percent_Identity=70.1639344262295, Blast_Score=454, Evalue=1e-129,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005911
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 35427; Mature: 35427

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLHELVNTIGQDLQRRYGEKVHKLTLHGGFSCPNRDGTIGRGGCTFCNVASFADEQAQV
CCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
KSIREQLTERAGEVHRAKKYLAYFQAYTSTYAEVQVLKNMYEEALKAADIVGLCVGTRPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
CVPDAVLDLLSDYVQQGYEIWLELGLQTASNSTLKRINRGHDFECYAEITQRARALGIKV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
CTHLIVGLPKESRDDNFATLEKVIEVGADGIKLHGLHIVEGSTMAKAWRAGKLDAPELEQ
HHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHCCCCCCHHHHH
YVEIACEMIRRTPPEVIFHRVSSAARRPTLLSPLWCENRWLAMTAIGQYLAQHGGQGSAL
HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
GHSFVYTKPQLKCGIHPQ
CCCEEEECCCCCCCCCCC
>Mature Secondary Structure
MQLHELVNTIGQDLQRRYGEKVHKLTLHGGFSCPNRDGTIGRGGCTFCNVASFADEQAQV
CCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
KSIREQLTERAGEVHRAKKYLAYFQAYTSTYAEVQVLKNMYEEALKAADIVGLCVGTRPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
CVPDAVLDLLSDYVQQGYEIWLELGLQTASNSTLKRINRGHDFECYAEITQRARALGIKV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
CTHLIVGLPKESRDDNFATLEKVIEVGADGIKLHGLHIVEGSTMAKAWRAGKLDAPELEQ
HHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHCCCCCCHHHHH
YVEIACEMIRRTPPEVIFHRVSSAARRPTLLSPLWCENRWLAMTAIGQYLAQHGGQGSAL
HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
GHSFVYTKPQLKCGIHPQ
CCCEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]