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The map label for this gene is ybaK [H]

Identifier: 27363728

GI number: 27363728

Start: 240370

End: 240849

Strand: Reverse

Name: ybaK [H]

Synonym: VV1_0247

Alternate gene names: 27363728

Gene position: 240849-240370 (Counterclockwise)

Preceding gene: 326423671

Following gene: 27363723

Centisome position: 7.34

GC content: 45.83

Gene sequence:

>480_bases
ATGACTCCGGCTATCAATCTTGCCAAGAAAAAGAAAGTTCCTCATACCATCCACGAATATCAGCACGATCCACGAGCGAC
AAGCTATGGTTTGGAAGCGGCAGAAGTGCTTGGGCAAGATCCAAAAAAAGTCTTTAAAACATTACTGTTTTGCTTAAATG
GCGAAGCAAAAAACTTGGCGGTAGCGATCATCCCCGTTGATCAAAAACTCAATCTAAAATTGGCAGCGAAAGCCGCTAAT
GGCAAAAAAGCCGATATGGCCGATCCTGAAATCGCGCAAAAAACCACAGGTTATGTCGTGGGCGGCATTAGTCCGCTCGG
GCAAAAGAAAGCTCTGCCCACCTTTCTTCATATGAGTGCAGGGCAACAAGAGACCATTTGTGTCAGTGCTGGTAAGCGTG
GCTTAGAGATTGAGCTAGCACCCAAAGATTTACTGATGCTCACTCGAGGGCATTTTGCTGAACTCTGTTTAGAGGCTTAA

Upstream 100 bases:

>100_bases
ATCGATAAGAGAAAGAGTTTGACTCAATCTCGCTGATATCTTTAACTAAAGCGCTATTCCGATCTGGGATAGCGCTTTTT
GTTTATACAGGAGAAAGACA

Downstream 100 bases:

>100_bases
GTTCTCTGAGGGGTAAAATAGAATACGTTTGACCAACAAAAAGGACGCTCGTAGGAGCGTCCTTTTCAAAGCTTGCGAGT
AATATTATTTCTTAAGAGTC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MTPAINLAKKKKVPHTIHEYQHDPRATSYGLEAAEVLGQDPKKVFKTLLFCLNGEAKNLAVAIIPVDQKLNLKLAAKAAN
GKKADMADPEIAQKTTGYVVGGISPLGQKKALPTFLHMSAGQQETICVSAGKRGLEIELAPKDLLMLTRGHFAELCLEA

Sequences:

>Translated_159_residues
MTPAINLAKKKKVPHTIHEYQHDPRATSYGLEAAEVLGQDPKKVFKTLLFCLNGEAKNLAVAIIPVDQKLNLKLAAKAAN
GKKADMADPEIAQKTTGYVVGGISPLGQKKALPTFLHMSAGQQETICVSAGKRGLEIELAPKDLLMLTRGHFAELCLEA
>Mature_158_residues
TPAINLAKKKKVPHTIHEYQHDPRATSYGLEAAEVLGQDPKKVFKTLLFCLNGEAKNLAVAIIPVDQKLNLKLAAKAANG
KKADMADPEIAQKTTGYVVGGISPLGQKKALPTFLHMSAGQQETICVSAGKRGLEIELAPKDLLMLTRGHFAELCLEA

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro). May compensate for the lack of Cys-tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak activity against Cys-tRNA(Cys) and Gly- tRNA(Gly), as wel

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=156, Percent_Identity=52.5641025641026, Blast_Score=164, Evalue=2e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17112; Mature: 16981

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPAINLAKKKKVPHTIHEYQHDPRATSYGLEAAEVLGQDPKKVFKTLLFCLNGEAKNLA
CCCCCCCHHHCCCCHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCCEE
VAIIPVDQKLNLKLAAKAANGKKADMADPEIAQKTTGYVVGGISPLGQKKALPTFLHMSA
EEEEECCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCEEEECCCCCCCCCCCCHHEECCC
GQQETICVSAGKRGLEIELAPKDLLMLTRGHFAELCLEA
CCCCEEEEECCCCCCEEEECCHHHEEECCCHHHHHHHCC
>Mature Secondary Structure 
TPAINLAKKKKVPHTIHEYQHDPRATSYGLEAAEVLGQDPKKVFKTLLFCLNGEAKNLA
CCCCCCHHHCCCCHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCCEE
VAIIPVDQKLNLKLAAKAANGKKADMADPEIAQKTTGYVVGGISPLGQKKALPTFLHMSA
EEEEECCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCEEEECCCCCCCCCCCCHHEECCC
GQQETICVSAGKRGLEIELAPKDLLMLTRGHFAELCLEA
CCCCEEEEECCCCCCEEEECCHHHEEECCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 3012467; 10493123 [H]