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The map label for this gene is ybfM [H]

Identifier: 27363687

GI number: 27363687

Start: 193702

End: 195051

Strand: Reverse

Name: ybfM [H]

Synonym: VV1_0205

Alternate gene names: 27363687

Gene position: 195051-193702 (Counterclockwise)

Preceding gene: 27363688

Following gene: 27363686

Centisome position: 5.94

GC content: 44.37

Gene sequence:

>1350_bases
ATGGACAAATTTTTTAAAGTATCTGCCATAACTGCAGCAATGGTAGGCGCAATCGCAGCAGCTCCAGCTTCAGCAGCGGA
CCAAGTAGGTCCACAGTATGCTGGTGAGGTTTCTGAGTTTTTTGCTGAATCAACCATCAGCGGTAACTTTAACATGTGGA
TGCGTGCTCGTGATCGCGGCAACGTTGATGCAAACGGTAACGATACTAAGAAAGAGACAAACCTGAACCACGGCAGCTTG
TTTATCAACCTCGGTTTTAATTCGGGTTACGTTAATGATGTCGTTGGTGCGGATTTCGTTATCTATAGCACTTGGGATAT
GTGGAATGATTCAGTTGGTGCTGGTCATGAAATGAACTTCCTTGACTGTGATGGTCCTGCGTCTGCTGGTTGTTGGAACA
ACCTAGAAAAAGGTGGTGTTTCTTTTGCAACAGCAGCTGCTAAGTTTAAGTTTGGTGATAATGTACGCGCTAAACTAGGT
TACTTCCAGCCATCAGTTGCAAGCGGTTTAGGTGTAAACTGGTCGTTTGCTCCTGGTACTTACCGTGGCGGTGAAATTGG
TGGTACATTCGGCAAGCTTGATTTAGGTTTCGTGGTTGCTGATGAATACAAAGCGCCTTGGTATAAAGAAACTGACGCTT
TCAAAGGTGTTGACGGCGATGATGAGATTTTGTTCTCTCTAGGTGCTCGTTATACTTTAGATAACGGCATTAGCCTAGAC
GGTGCTCTTTCTAAGTTGGATGAGCGTACAACGGCTCACTTTAAAGTGAAAGGCACAACTGATGGTGGCTTCTACTGGTC
TCCACAACTTTATATCGTTCAAGATGAAAACCAATATACAAATGATGATCTAGGCTACCAGTTGGCGTTTTTGTCTAGCT
TCTCTGCTGGTGCTTATTCTTTCCGTGCTGAAGCAACCTATACTTCTGCTGACGAAGATGGAAACTGGTTTGCATACCGT
CCTACAGCAGGTTACGGCGGCTCAAATGGTGCATATGAAATTTGGTGGAACAACCGTTCAGACTTTAACCATCATGAAGA
GCTAGCAGTTTTCGGTTCTGTATCTCGTGACTTTTCTGATATTGGCGGCACAGGGTTTAGTGCTGGTGTGAGTGCTGCTC
TTGGTACTGGTGCTTCAGTTGCAGGCTACGATGATCTAACAGAATACGCGTACAGTATGTTTGCTAACTACGCAATTCAA
GCTGGTGCATTGAAAGATGCGACTGTAGCATTCCACTACACTCAATACTTCAATGATTCTGACGCTCCAAACTGGACTGG
TTATGCAAACGCGTTCCAAGATGAGACTGATTTCAAGTTGATTCTAGCGATTCCTTTCAACGTAAAATAA

Upstream 100 bases:

>100_bases
ATTAATTAGGTTTTTTCGTAGGAAATGATTTCTCCCTTCGGCGGCCAACTAAAGGTGAGAATGAAAAAATACAGCTATAT
CCATTTTTAGGAGTTTTTCC

Downstream 100 bases:

>100_bases
GTTGAACCGAGTATAACTGCCTAATAAGCTGAGCACTAAGTGCTCGGCTTTTTTCTTTTCTAGGAGGCAACATGAAAAAT
TATAGTTTGGCAGCACTGTG

Product: N-acetylglucosamine-regulated outer membrane porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 449; Mature: 449

Protein sequence:

>449_residues
MDKFFKVSAITAAMVGAIAAAPASAADQVGPQYAGEVSEFFAESTISGNFNMWMRARDRGNVDANGNDTKKETNLNHGSL
FINLGFNSGYVNDVVGADFVIYSTWDMWNDSVGAGHEMNFLDCDGPASAGCWNNLEKGGVSFATAAAKFKFGDNVRAKLG
YFQPSVASGLGVNWSFAPGTYRGGEIGGTFGKLDLGFVVADEYKAPWYKETDAFKGVDGDDEILFSLGARYTLDNGISLD
GALSKLDERTTAHFKVKGTTDGGFYWSPQLYIVQDENQYTNDDLGYQLAFLSSFSAGAYSFRAEATYTSADEDGNWFAYR
PTAGYGGSNGAYEIWWNNRSDFNHHEELAVFGSVSRDFSDIGGTGFSAGVSAALGTGASVAGYDDLTEYAYSMFANYAIQ
AGALKDATVAFHYTQYFNDSDAPNWTGYANAFQDETDFKLILAIPFNVK

Sequences:

>Translated_449_residues
MDKFFKVSAITAAMVGAIAAAPASAADQVGPQYAGEVSEFFAESTISGNFNMWMRARDRGNVDANGNDTKKETNLNHGSL
FINLGFNSGYVNDVVGADFVIYSTWDMWNDSVGAGHEMNFLDCDGPASAGCWNNLEKGGVSFATAAAKFKFGDNVRAKLG
YFQPSVASGLGVNWSFAPGTYRGGEIGGTFGKLDLGFVVADEYKAPWYKETDAFKGVDGDDEILFSLGARYTLDNGISLD
GALSKLDERTTAHFKVKGTTDGGFYWSPQLYIVQDENQYTNDDLGYQLAFLSSFSAGAYSFRAEATYTSADEDGNWFAYR
PTAGYGGSNGAYEIWWNNRSDFNHHEELAVFGSVSRDFSDIGGTGFSAGVSAALGTGASVAGYDDLTEYAYSMFANYAIQ
AGALKDATVAFHYTQYFNDSDAPNWTGYANAFQDETDFKLILAIPFNVK
>Mature_449_residues
MDKFFKVSAITAAMVGAIAAAPASAADQVGPQYAGEVSEFFAESTISGNFNMWMRARDRGNVDANGNDTKKETNLNHGSL
FINLGFNSGYVNDVVGADFVIYSTWDMWNDSVGAGHEMNFLDCDGPASAGCWNNLEKGGVSFATAAAKFKFGDNVRAKLG
YFQPSVASGLGVNWSFAPGTYRGGEIGGTFGKLDLGFVVADEYKAPWYKETDAFKGVDGDDEILFSLGARYTLDNGISLD
GALSKLDERTTAHFKVKGTTDGGFYWSPQLYIVQDENQYTNDDLGYQLAFLSSFSAGAYSFRAEATYTSADEDGNWFAYR
PTAGYGGSNGAYEIWWNNRSDFNHHEELAVFGSVSRDFSDIGGTGFSAGVSAALGTGASVAGYDDLTEYAYSMFANYAIQ
AGALKDATVAFHYTQYFNDSDAPNWTGYANAFQDETDFKLILAIPFNVK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786897, Length=474, Percent_Identity=33.5443037974684, Blast_Score=201, Evalue=9e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005318 [H]

Pfam domain/function: PF03573 OprD [H]

EC number: NA

Molecular weight: Translated: 48543; Mature: 48543

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKFFKVSAITAAMVGAIAAAPASAADQVGPQYAGEVSEFFAESTISGNFNMWMRARDRG
CCCEEEHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
NVDANGNDTKKETNLNHGSLFINLGFNSGYVNDVVGADFVIYSTWDMWNDSVGAGHEMNF
CCCCCCCCCCHHCCCCCCEEEEEECCCCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCE
LDCDGPASAGCWNNLEKGGVSFATAAAKFKFGDNVRAKLGYFQPSVASGLGVNWSFAPGT
EECCCCCCCCCCCCHHHCCCEEEEEEEEEECCCCCEEEECCCCCHHHCCCCCCEEECCCC
YRGGEIGGTFGKLDLGFVVADEYKAPWYKETDAFKGVDGDDEILFSLGARYTLDNGISLD
CCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHEECCCCEEECCCCCCH
GALSKLDERTTAHFKVKGTTDGGFYWSPQLYIVQDENQYTNDDLGYQLAFLSSFSAGAYS
HHHHHHHCCCEEEEEEEECCCCCEEECCEEEEEECCCCCCCCCCCEEEEEECCCCCCCEE
FRAEATYTSADEDGNWFAYRPTAGYGGSNGAYEIWWNNRSDFNHHEELAVFGSVSRDFSD
EEECEEEECCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCHHEEEEECCCCCHHH
IGGTGFSAGVSAALGTGASVAGYDDLTEYAYSMFANYAIQAGALKDATVAFHYTQYFNDS
CCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEEECCCCC
DAPNWTGYANAFQDETDFKLILAIPFNVK
CCCCCCCCCCCCCCCCCCEEEEEECCCCC
>Mature Secondary Structure
MDKFFKVSAITAAMVGAIAAAPASAADQVGPQYAGEVSEFFAESTISGNFNMWMRARDRG
CCCEEEHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
NVDANGNDTKKETNLNHGSLFINLGFNSGYVNDVVGADFVIYSTWDMWNDSVGAGHEMNF
CCCCCCCCCCHHCCCCCCEEEEEECCCCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCE
LDCDGPASAGCWNNLEKGGVSFATAAAKFKFGDNVRAKLGYFQPSVASGLGVNWSFAPGT
EECCCCCCCCCCCCHHHCCCEEEEEEEEEECCCCCEEEECCCCCHHHCCCCCCEEECCCC
YRGGEIGGTFGKLDLGFVVADEYKAPWYKETDAFKGVDGDDEILFSLGARYTLDNGISLD
CCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHEECCCCEEECCCCCCH
GALSKLDERTTAHFKVKGTTDGGFYWSPQLYIVQDENQYTNDDLGYQLAFLSSFSAGAYS
HHHHHHHCCCEEEEEEEECCCCCEEECCEEEEEECCCCCCCCCCCEEEEEECCCCCCCEE
FRAEATYTSADEDGNWFAYRPTAGYGGSNGAYEIWWNNRSDFNHHEELAVFGSVSRDFSD
EEECEEEECCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCHHEEEEECCCCCHHH
IGGTGFSAGVSAALGTGASVAGYDDLTEYAYSMFANYAIQAGALKDATVAFHYTQYFNDS
CCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEEECCCCC
DAPNWTGYANAFQDETDFKLILAIPFNVK
CCCCCCCCCCCCCCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]