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The map label for this gene is sdhD [H]

Identifier: 27363643

GI number: 27363643

Start: 150628

End: 150972

Strand: Reverse

Name: sdhD [H]

Synonym: VV1_0160

Alternate gene names: 27363643

Gene position: 150972-150628 (Counterclockwise)

Preceding gene: 27363644

Following gene: 27363642

Centisome position: 4.6

GC content: 44.64

Gene sequence:

>345_bases
ATGGTAAAACACGTTTCCTCTGTTGGCCGTAACGGTGTGCACGATTTCTTGTTGATTCGTGCAACGGCCATCATCATGAC
TCTTTACACCATTTATCTTGTTAGCTTCTGTGCGTTCACAGATATCAATTATGCATCCTGGACTCAGTTTTTTGGTGGCA
CTTTTACTAAAGTCTTCACCATGCTTGCTCTCGCTTCTGTCCTGATTCATGCCTGGATTGGATTATGGCAAGTGCTGACT
GACTACATCAAGTGCGCCAAATTGCGTGGTGGTTTACAACTTGGTGTGATCGCACTGCTGTTCGGGTATTTCTTCTCTGG
TCTGTTTGTATTGTGGGGTGCATAA

Upstream 100 bases:

>100_bases
TGGACTTAGGCCATTTTGAAGAGCTTGAGTCTGGCGCAATGAGTGCCAAAGTTGCATTTGCTGCCACCGCTGTCTTATCA
CTATTGGCGGGGATTTTGGT

Downstream 100 bases:

>100_bases
GTGTCTATTCCAGTTCGCGAATTTGATGCCGTAGTAATCGGCGCTGGTGGTGCAGGTATGCGTGCTGCACTACAAATTTC
TGAGCAAGGCCTTTCTTGTG

Product: succinate dehydrogenase, hydrophobic membrane anchor protein

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MVKHVSSVGRNGVHDFLLIRATAIIMTLYTIYLVSFCAFTDINYASWTQFFGGTFTKVFTMLALASVLIHAWIGLWQVLT
DYIKCAKLRGGLQLGVIALLFGYFFSGLFVLWGA

Sequences:

>Translated_114_residues
MVKHVSSVGRNGVHDFLLIRATAIIMTLYTIYLVSFCAFTDINYASWTQFFGGTFTKVFTMLALASVLIHAWIGLWQVLT
DYIKCAKLRGGLQLGVIALLFGYFFSGLFVLWGA
>Mature_114_residues
MVKHVSSVGRNGVHDFLLIRATAIIMTLYTIYLVSFCAFTDINYASWTQFFGGTFTKVFTMLALASVLIHAWIGLWQVLT
DYIKCAKLRGGLQLGVIALLFGYFFSGLFVLWGA

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2142

COG function: function code C; Succinate dehydrogenase, hydrophobic anchor subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786941, Length=114, Percent_Identity=57.0175438596491, Blast_Score=121, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014312
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 12739; Mature: 12739

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKHVSSVGRNGVHDFLLIRATAIIMTLYTIYLVSFCAFTDINYASWTQFFGGTFTKVFT
CCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHH
MLALASVLIHAWIGLWQVLTDYIKCAKLRGGLQLGVIALLFGYFFSGLFVLWGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVKHVSSVGRNGVHDFLLIRATAIIMTLYTIYLVSFCAFTDINYASWTQFFGGTFTKVFT
CCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHH
MLALASVLIHAWIGLWQVLTDYIKCAKLRGGLQLGVIALLFGYFFSGLFVLWGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]