Click here to switch to the map view.

The map label for this gene is sdhC [H]

Identifier: 27363644

GI number: 27363644

Start: 150966

End: 151358

Strand: Reverse

Name: sdhC [H]

Synonym: VV1_0161

Alternate gene names: 27363644

Gene position: 151358-150966 (Counterclockwise)

Preceding gene: 27363646

Following gene: 27363643

Centisome position: 4.61

GC content: 45.8

Gene sequence:

>393_bases
GTGAGCAAGCCCGTGAAAGAAAGAAAGTCAAGACCTGTTAATTTAGATTTACAGACCATTCGCTTTCCTATCACAGCAAT
CGCGTCCATCCTGCACCGTGTGTCAGGTGTGATTACGTTTGTTGCGGTGGGAATTTTGCTTTGGTTACTATCCATTTCTC
TGTCATCCCCAGTAGGCTTTATGGAAGCAAGCGACATCGTCGATAGCTTCTTTGTGAAGTTTATTCTATGGGGCATTTTA
ACTGCGTTGGCATACCACATCGCTGGTGGTATTCGTCACCTGATGATGGACTTAGGCCATTTTGAAGAGCTTGAGTCTGG
CGCAATGAGTGCCAAAGTTGCATTTGCTGCCACCGCTGTCTTATCACTATTGGCGGGGATTTTGGTATGGTAA

Upstream 100 bases:

>100_bases
TTAATGGAATCATTTGCCGGAATGTTGTTAATTAAATGTTAACTTTTGTGGGGTTGGGAGCCAAAATTCGTTCATAACAA
TAAATGCTCAATGGAGCTGA

Downstream 100 bases:

>100_bases
AACACGTTTCCTCTGTTGGCCGTAACGGTGTGCACGATTTCTTGTTGATTCGTGCAACGGCCATCATCATGACTCTTTAC
ACCATTTATCTTGTTAGCTT

Product: succinate dehydrogenase cytochrome b556 large membrane subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 130; Mature: 129

Protein sequence:

>130_residues
MSKPVKERKSRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLSISLSSPVGFMEASDIVDSFFVKFILWGIL
TALAYHIAGGIRHLMMDLGHFEELESGAMSAKVAFAATAVLSLLAGILVW

Sequences:

>Translated_130_residues
MSKPVKERKSRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLSISLSSPVGFMEASDIVDSFFVKFILWGIL
TALAYHIAGGIRHLMMDLGHFEELESGAMSAKVAFAATAVLSLLAGILVW
>Mature_129_residues
SKPVKERKSRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLSISLSSPVGFMEASDIVDSFFVKFILWGILT
ALAYHIAGGIRHLMMDLGHFEELESGAMSAKVAFAATAVLSLLAGILVW

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Escherichia coli, GI1786940, Length=124, Percent_Identity=76.6129032258064, Blast_Score=189, Evalue=4e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 14124; Mature: 13993

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: PS01000 SDH_CYT_1 ; PS01001 SDH_CYT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKPVKERKSRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLSISLSSPVGF
CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
MEASDIVDSFFVKFILWGILTALAYHIAGGIRHLMMDLGHFEELESGAMSAKVAFAATAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSLLAGILVW
HHHHHHHHCC
>Mature Secondary Structure 
SKPVKERKSRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLSISLSSPVGF
CCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
MEASDIVDSFFVKFILWGILTALAYHIAGGIRHLMMDLGHFEELESGAMSAKVAFAATAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSLLAGILVW
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]