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The map label for this gene is omp25 [H]

Identifier: 23501032

GI number: 23501032

Start: 130447

End: 131139

Strand: Reverse

Name: omp25 [H]

Synonym: BR0118

Alternate gene names: 23501032

Gene position: 131139-130447 (Counterclockwise)

Preceding gene: 23501033

Following gene: 23501031

Centisome position: 6.22

GC content: 55.99

Gene sequence:

>693_bases
ATGACGTTCAAAAATCTACTTGGCGCTTCGCTGGTTGCAGTTATTACCAGCACCAGCGCATATGCGGCGGATGCCATTGT
TGCGCAGGAGCCCGCACCGATTGCGATTGCGCCTAGCTTTTCATGGGCGGGCGCTTATTTCGGCGGTCAGGTTGGTTACG
GCTGGGGCCGCGCCAAGCTTGAAAACCGCACCAATGGCGGCACGTCCGAATTCAAGCCGAATGGCTTTATCGGCGGCCTT
TACACCGGCTACAACTTCGACACGGGCAACAATTTCATTCTCGGCCTTGACGCCAATGTCGATTACAACAACCTGAAGAA
GTCGCGCGATTTCATCACCAGCGGCAATCCTGTCCAGACCACGGGCGAAACCCAGCTACGGTGGTCGGGCGCTGTTCGTG
CACGCGCCGGTTATGCCATTGACCGTTTCATGCCGTACATTGCTGGCGGTGTTGCCTTTGGCGGCATCAAGAATTCGCTC
CGCATCGGCGGCGAAGAATCCAGCAAGAGCAAGACCCAGACCGGCTGGACCGTCGGAGCAGGCATCGATTACGCTGCAAC
CGACAATGTTCTTCTGCGTCTGGAATATCGCTACACCGATTACGGCAAGAAGAATTTCGGTCTTAACGATCTCGACACCC
GCGGTTCGTTCAAGACCAACGATATCCGCCTCGGCGTTGCCTATAAGTTCTGA

Upstream 100 bases:

>100_bases
CAAGACAATTCATTATTGTTGCTCATTTACTACATACATTCGACCAGATCATCACTATATGCTAGCCGCATTGCAACGCC
ATTCTTATTAGGAGTTTTCA

Downstream 100 bases:

>100_bases
TTGCCGACGCACAGAACCGGAAATGGAAGCCCCGCGCGCACCTTGCACGCGGGGCTTTTTTTGTGCATGTCCGGTTTACG
TCCCTTTAAACTGCCGCATT

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MTFKNLLGASLVAVITSTSAYAADAIVAQEPAPIAIAPSFSWAGAYFGGQVGYGWGRAKLENRTNGGTSEFKPNGFIGGL
YTGYNFDTGNNFILGLDANVDYNNLKKSRDFITSGNPVQTTGETQLRWSGAVRARAGYAIDRFMPYIAGGVAFGGIKNSL
RIGGEESSKSKTQTGWTVGAGIDYAATDNVLLRLEYRYTDYGKKNFGLNDLDTRGSFKTNDIRLGVAYKF

Sequences:

>Translated_230_residues
MTFKNLLGASLVAVITSTSAYAADAIVAQEPAPIAIAPSFSWAGAYFGGQVGYGWGRAKLENRTNGGTSEFKPNGFIGGL
YTGYNFDTGNNFILGLDANVDYNNLKKSRDFITSGNPVQTTGETQLRWSGAVRARAGYAIDRFMPYIAGGVAFGGIKNSL
RIGGEESSKSKTQTGWTVGAGIDYAATDNVLLRLEYRYTDYGKKNFGLNDLDTRGSFKTNDIRLGVAYKF
>Mature_229_residues
TFKNLLGASLVAVITSTSAYAADAIVAQEPAPIAIAPSFSWAGAYFGGQVGYGWGRAKLENRTNGGTSEFKPNGFIGGLY
TGYNFDTGNNFILGLDANVDYNNLKKSRDFITSGNPVQTTGETQLRWSGAVRARAGYAIDRFMPYIAGGVAFGGIKNSLR
IGGEESSKSKTQTGWTVGAGIDYAATDNVLLRLEYRYTDYGKKNFGLNDLDTRGSFKTNDIRLGVAYKF

Specific function: Unknown

COG id: COG3637

COG function: function code M; Opacity protein and related surface antigens

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the omp25/ropB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR000498 [H]

Pfam domain/function: PF01389 OmpA_membrane [H]

EC number: NA

Molecular weight: Translated: 24749; Mature: 24618

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFKNLLGASLVAVITSTSAYAADAIVAQEPAPIAIAPSFSWAGAYFGGQVGYGWGRAKL
CCHHHHHHHHHHHHHHCCCHHHHHEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCEEE
ENRTNGGTSEFKPNGFIGGLYTGYNFDTGNNFILGLDANVDYNNLKKSRDFITSGNPVQT
CCCCCCCCCCCCCCCEEEEEEECEEECCCCCEEEEEECCCCHHHHHHHHCCCCCCCCEEE
TGETQLRWSGAVRARAGYAIDRFMPYIAGGVAFGGIKNSLRIGGEESSKSKTQTGWTVGA
CCCCEEEECCCEEECCCCCHHHHHHHHHCCCEECCCCCCEEECCCCCCCCCCCCCEEEEC
GIDYAATDNVLLRLEYRYTDYGKKNFGLNDLDTRGSFKTNDIRLGVAYKF
CCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEECCEEEEEEEECC
>Mature Secondary Structure 
TFKNLLGASLVAVITSTSAYAADAIVAQEPAPIAIAPSFSWAGAYFGGQVGYGWGRAKL
CHHHHHHHHHHHHHHCCCHHHHHEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCEEE
ENRTNGGTSEFKPNGFIGGLYTGYNFDTGNNFILGLDANVDYNNLKKSRDFITSGNPVQT
CCCCCCCCCCCCCCCEEEEEEECEEECCCCCEEEEEECCCCHHHHHHHHCCCCCCCCEEE
TGETQLRWSGAVRARAGYAIDRFMPYIAGGVAFGGIKNSLRIGGEESSKSKTQTGWTVGA
CCCCEEEECCCEEECCCCCHHHHHHHHHCCCEECCCCCCEEECCCCCCCCCCCCCEEEEC
GIDYAATDNVLLRLEYRYTDYGKKNFGLNDLDTRGSFKTNDIRLGVAYKF
CCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEECCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7896724 [H]