Click here to switch to the map view.

The map label for this gene is omp25 [H]

Identifier: 23501033

GI number: 23501033

Start: 131407

End: 132093

Strand: Reverse

Name: omp25 [H]

Synonym: BR0119

Alternate gene names: 23501033

Gene position: 132093-131407 (Counterclockwise)

Preceding gene: 23501034

Following gene: 23501032

Centisome position: 6.27

GC content: 56.19

Gene sequence:

>687_bases
ATGAAGCTCAAGGCTCTTCTTTTTGCATCGACCGTCGTTCTCGTTGCCGCGACCGGCGCAAACGCTGCTGACGCCGTCAT
TGAACAGGAACCTGCACCGGTTGTTGTTGCTCCGACCTTCACTTGGAATGGTGCCTATCTCGGCGGCCAGATCGGCTATG
CCTGGGGCAAGTCCCATTTCAGCTATGACTCGACCGGCCTCGGCGATATAAAGCCGGACGGCTTCCTTGGCGGTCTTTAT
GCCGGTTACAATTTCGACCTCGGCAACAGTGTTGTTCTCGGTATTGACGGCGACGTGACCTATAACGACGTTTCCAAGAA
CATCGACTTTTTGGATGAAAATAACGCCGCCGCCACCTTTGAAAACCGCCTTCGCTGGTCCGGTGCCGTGCGCGCACGCG
CCGGTTATGCGGTTGACCGCTTCCTGCCCTATATCGCAGGCGGTGTGGCTTTCGGCAGCCTGAGAAACAGGGGCGAATTT
GAAGGCACCGGCTTCTCTCAAAGCAAGACGCTCACCGGCTGGACCATCGGCGCTGGCATGGACTACGCCGCAACCGACAA
CGTGATCCTGCGCCTCGAATATCGCTACACCGACTACGGCAATAAGGATTACGGCTTCGACGACGCTGCCGTTACCAACA
ATTTCAAGACCAACGATATCCGTTTCGGTGTCGCTTACAAGTTCTGA

Upstream 100 bases:

>100_bases
CATTCCGCCTGCTGTGTCCTGTTTGCTACAGACTTTTGACAGCGATCCCTTATATTAGAGACAAATATTGGTTGTGGGAC
TATTTCCCGAGAGGTTTATC

Downstream 100 bases:

>100_bases
TAGTTTGGTTGAAATCTACGAAAAGGCCCCGCTTTGCGGGGCCTTTTTTTATGTCAATCCTCACCCAATATTTGATATTC
AATTTAAATATTAGATATAT

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MKLKALLFASTVVLVAATGANAADAVIEQEPAPVVVAPTFTWNGAYLGGQIGYAWGKSHFSYDSTGLGDIKPDGFLGGLY
AGYNFDLGNSVVLGIDGDVTYNDVSKNIDFLDENNAAATFENRLRWSGAVRARAGYAVDRFLPYIAGGVAFGSLRNRGEF
EGTGFSQSKTLTGWTIGAGMDYAATDNVILRLEYRYTDYGNKDYGFDDAAVTNNFKTNDIRFGVAYKF

Sequences:

>Translated_228_residues
MKLKALLFASTVVLVAATGANAADAVIEQEPAPVVVAPTFTWNGAYLGGQIGYAWGKSHFSYDSTGLGDIKPDGFLGGLY
AGYNFDLGNSVVLGIDGDVTYNDVSKNIDFLDENNAAATFENRLRWSGAVRARAGYAVDRFLPYIAGGVAFGSLRNRGEF
EGTGFSQSKTLTGWTIGAGMDYAATDNVILRLEYRYTDYGNKDYGFDDAAVTNNFKTNDIRFGVAYKF
>Mature_228_residues
MKLKALLFASTVVLVAATGANAADAVIEQEPAPVVVAPTFTWNGAYLGGQIGYAWGKSHFSYDSTGLGDIKPDGFLGGLY
AGYNFDLGNSVVLGIDGDVTYNDVSKNIDFLDENNAAATFENRLRWSGAVRARAGYAVDRFLPYIAGGVAFGSLRNRGEF
EGTGFSQSKTLTGWTIGAGMDYAATDNVILRLEYRYTDYGNKDYGFDDAAVTNNFKTNDIRFGVAYKF

Specific function: Unknown

COG id: COG3637

COG function: function code M; Opacity protein and related surface antigens

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the omp25/ropB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR000498 [H]

Pfam domain/function: PF01389 OmpA_membrane [H]

EC number: NA

Molecular weight: Translated: 24586; Mature: 24586

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKALLFASTVVLVAATGANAADAVIEQEPAPVVVAPTFTWNGAYLGGQIGYAWGKSHF
CCCHHHHHHEEEEEEEECCCCHHHHHHCCCCCCEEEEECEEECCEEECCEEEEEECCCCC
SYDSTGLGDIKPDGFLGGLYAGYNFDLGNSVVLGIDGDVTYNDVSKNIDFLDENNAAATF
CCCCCCCCCCCCCCEEEEEEECEEECCCCEEEEEECCCEEECHHCCCCCEEECCCCEEEH
ENRLRWSGAVRARAGYAVDRFLPYIAGGVAFGSLRNRGEFEGTGFSQSKTLTGWTIGAGM
HHHEEECCCEEECCCCHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCEEEEEEECCCC
DYAATDNVILRLEYRYTDYGNKDYGFDDAAVTNNFKTNDIRFGVAYKF
CCCCCCCEEEEEEEEECCCCCCCCCCCCHHCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MKLKALLFASTVVLVAATGANAADAVIEQEPAPVVVAPTFTWNGAYLGGQIGYAWGKSHF
CCCHHHHHHEEEEEEEECCCCHHHHHHCCCCCCEEEEECEEECCEEECCEEEEEECCCCC
SYDSTGLGDIKPDGFLGGLYAGYNFDLGNSVVLGIDGDVTYNDVSKNIDFLDENNAAATF
CCCCCCCCCCCCCCEEEEEEECEEECCCCEEEEEECCCEEECHHCCCCCEEECCCCEEEH
ENRLRWSGAVRARAGYAVDRFLPYIAGGVAFGSLRNRGEFEGTGFSQSKTLTGWTIGAGM
HHHEEECCCEEECCCCHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCEEEEEEECCCC
DYAATDNVILRLEYRYTDYGNKDYGFDDAAVTNNFKTNDIRFGVAYKF
CCCCCCCEEEEEEEEECCCCCCCCCCCCHHCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7896724 [H]