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The map label for this gene is yazB [H]

Identifier: 28563899

GI number: 28563899

Start: 89145

End: 89375

Strand: Direct

Name: yazB [H]

Synonym: OB3501

Alternate gene names: 28563899

Gene position: 89145-89375 (Clockwise)

Preceding gene: 23097542

Following gene: 23097543

Centisome position: 2.46

GC content: 35.93

Gene sequence:

>231_bases
ATGGATAAGAAGCGAATCGGAAGAAGAATAAAAGCTTTTCGTAAATTAAAAGGCTACACACAAATACAATTTGCTCAAGA
GATGAAGCTATCCACTTCAAAACTAGGAAATATTGAAAGAGGTACAAAGCAGCCTTCCGACCAATTATTAGCTGAGATTG
CTGAAAAGCTATCCATTTCTAAAGAAGAGCTTGTATTAGAGAACAGTGTAACTCGTCTTGAGGAAAACTAG

Upstream 100 bases:

>100_bases
TTCAAGAAATCGCACCAGGCTATATAATCCCTGTGAAAAATAAAACAGTGGATTCTTATGTCAATGAACTTCCTGAGACA
GAGAAAAAGGATGTAAAAAG

Downstream 100 bases:

>100_bases
ATATGATATTACTGTTTTAAATCTAACAAGTAGTAGCTATAGAGTAATTATTTTTTTATGCGGAAAGAAAAGTGTTTAAG
ATTTCGATATTTTGTTATAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 76; Mature: 76

Protein sequence:

>76_residues
MDKKRIGRRIKAFRKLKGYTQIQFAQEMKLSTSKLGNIERGTKQPSDQLLAEIAEKLSISKEELVLENSVTRLEEN

Sequences:

>Translated_76_residues
MDKKRIGRRIKAFRKLKGYTQIQFAQEMKLSTSKLGNIERGTKQPSDQLLAEIAEKLSISKEELVLENSVTRLEEN
>Mature_76_residues
MDKKRIGRRIKAFRKLKGYTQIQFAQEMKLSTSKLGNIERGTKQPSDQLLAEIAEKLSISKEELVLENSVTRLEEN

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 8764; Mature: 8764

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKKRIGRRIKAFRKLKGYTQIQFAQEMKLSTSKLGNIERGTKQPSDQLLAEIAEKLSIS
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
KEELVLENSVTRLEEN
HHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDKKRIGRRIKAFRKLKGYTQIQFAQEMKLSTSKLGNIERGTKQPSDQLLAEIAEKLSIS
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
KEELVLENSVTRLEEN
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]