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The map label for this gene is ycjO [C]

Identifier: 23100928

GI number: 23100928

Start: 3608378

End: 3609703

Strand: Reverse

Name: ycjO [C]

Synonym: OB3473

Alternate gene names: 23100928

Gene position: 3609703-3608378 (Counterclockwise)

Preceding gene: 23100929

Following gene: 23100927

Centisome position: 99.43

GC content: 37.03

Gene sequence:

>1326_bases
ATGAAGAAAAATAAACGTGGCTTCCAGCTTAATGAGAAACAATTAGGGTACGCAATGGTTTTGCCGTCATTAATTCTCGT
TTGTATCGTTGTTCTTTGGCCAGTTGCACAATCATTTTATAACAGTTTATTTGATTATCGATTAAATGATCCAAATCGAT
CCGAATTAATGCTTAGTGCCAATATAGACTTAGAAAGATATGTAGATAACCAATTTTACTTAGATAACCAATTAGAAGAT
TTGACAATGCAGGTAGATAGTGATGCAGGAGCAAAGATTGAAGAAATGAAAGAAGGTATTAACCATCATCATGAGCAGCT
GTTATCAGATGAAGAGACAAAACAAAAAGTAGAAAAAGTCGATGAGTTATTGATGAATTATCAGCCTGTGACAGATTCTG
AATTAAAATATCAGAAGATAGACAGTGATTTTGCAGATCGTTATCGAGAGGAATTGTTACAGTATCAAGCATCACTGATG
GAGATCGCAGAATCAACAGCAGATGAAACCTTAAGTCAAAGTATTGAACAAACTGCAGATTTAACAGGTGCTACTGGCGA
GACAATTTTACAGTCCAACTTTATTGGATTGAAAAATTATGGGAAGTATCTCCAGGATAATAGAATGTGGGGAGCTTTAT
GGAATACAACATTTTTCACCGTAATTACAGTAGCTTTAGAGCTAGTGATTGGCGTCTGTATTGCCTTATTAATTAATCGT
GCATTTAAAGGGCGGGGTATCATACGGGCTTCCGTATTGATCCCATGGGCGATTCCAACAGCAGTAGCAGCAATGATGTG
GGGCTTCCTCTTTGATGGACAATCTGGAATTGTTGCCCATTATTTAGAAGCATTACATATCATTCCAGACGCCTCGTGGC
TATTATCCACATCAGATGGTGGGATGTTCTCGATTATTCTCGCAGATGTATGGAAAACAACACCATATATGGCTTTGCTT
ATCTTAGCGGGATTACAAACGATACCCGAATCGTTGTATGAAGCGTCGGATGTAGACGGAGCAAATAAATTTCAACAATT
TTGGAAGATTACATTACCATTATTAAAATCTTCTATTCTTGTAGCTTTATTATTTAGAACGTTAGATGCTTTTCGAGTGT
TTGATTTAATCTACGTATTAACTGGCGGTGGGCCGGCAAATGCTACTGAATCTATATCGGTTTACGCGTATAAAACCTTG
TTTGCACAGCAAAATTTCGGAGAGGGATCTGTCTTATCTGTCATCGTTTTCCTATTTGTAGCGATTATTAGTTTCATTTA
TGTCAAATTAATTGGATCCGACTTGTTTGCAGGTAGAACGAAGTGA

Upstream 100 bases:

>100_bases
AAAATGGAAGCTGCCATGAATGAATAAAATGAAAGTTAATAAGGCAAGGTGGGAATTCTCTCATCTTGCCTTTCTAGATA
GTAAGTAAAGGAGGTACAAC

Downstream 100 bases:

>100_bases
GGAGGAGAATAGCATGAAAAAAAGAGGCACCGTCGGTTTTTATATATTCTTAGTAATTTTTGTGTTTTTAGTGATGTTTC
CATTTATTTGGGTTTTCTTA

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MKKNKRGFQLNEKQLGYAMVLPSLILVCIVVLWPVAQSFYNSLFDYRLNDPNRSELMLSANIDLERYVDNQFYLDNQLED
LTMQVDSDAGAKIEEMKEGINHHHEQLLSDEETKQKVEKVDELLMNYQPVTDSELKYQKIDSDFADRYREELLQYQASLM
EIAESTADETLSQSIEQTADLTGATGETILQSNFIGLKNYGKYLQDNRMWGALWNTTFFTVITVALELVIGVCIALLINR
AFKGRGIIRASVLIPWAIPTAVAAMMWGFLFDGQSGIVAHYLEALHIIPDASWLLSTSDGGMFSIILADVWKTTPYMALL
ILAGLQTIPESLYEASDVDGANKFQQFWKITLPLLKSSILVALLFRTLDAFRVFDLIYVLTGGGPANATESISVYAYKTL
FAQQNFGEGSVLSVIVFLFVAIISFIYVKLIGSDLFAGRTK

Sequences:

>Translated_441_residues
MKKNKRGFQLNEKQLGYAMVLPSLILVCIVVLWPVAQSFYNSLFDYRLNDPNRSELMLSANIDLERYVDNQFYLDNQLED
LTMQVDSDAGAKIEEMKEGINHHHEQLLSDEETKQKVEKVDELLMNYQPVTDSELKYQKIDSDFADRYREELLQYQASLM
EIAESTADETLSQSIEQTADLTGATGETILQSNFIGLKNYGKYLQDNRMWGALWNTTFFTVITVALELVIGVCIALLINR
AFKGRGIIRASVLIPWAIPTAVAAMMWGFLFDGQSGIVAHYLEALHIIPDASWLLSTSDGGMFSIILADVWKTTPYMALL
ILAGLQTIPESLYEASDVDGANKFQQFWKITLPLLKSSILVALLFRTLDAFRVFDLIYVLTGGGPANATESISVYAYKTL
FAQQNFGEGSVLSVIVFLFVAIISFIYVKLIGSDLFAGRTK
>Mature_441_residues
MKKNKRGFQLNEKQLGYAMVLPSLILVCIVVLWPVAQSFYNSLFDYRLNDPNRSELMLSANIDLERYVDNQFYLDNQLED
LTMQVDSDAGAKIEEMKEGINHHHEQLLSDEETKQKVEKVDELLMNYQPVTDSELKYQKIDSDFADRYREELLQYQASLM
EIAESTADETLSQSIEQTADLTGATGETILQSNFIGLKNYGKYLQDNRMWGALWNTTFFTVITVALELVIGVCIALLINR
AFKGRGIIRASVLIPWAIPTAVAAMMWGFLFDGQSGIVAHYLEALHIIPDASWLLSTSDGGMFSIILADVWKTTPYMALL
ILAGLQTIPESLYEASDVDGANKFQQFWKITLPLLKSSILVALLFRTLDAFRVFDLIYVLTGGGPANATESISVYAYKTL
FAQQNFGEGSVLSVIVFLFVAIISFIYVKLIGSDLFAGRTK

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=232, Percent_Identity=31.8965517241379, Blast_Score=136, Evalue=3e-33,
Organism=Escherichia coli, GI1790465, Length=226, Percent_Identity=31.858407079646, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1789861, Length=274, Percent_Identity=29.1970802919708, Blast_Score=107, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 49577; Mature: 49577

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNKRGFQLNEKQLGYAMVLPSLILVCIVVLWPVAQSFYNSLFDYRLNDPNRSELMLSA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
NIDLERYVDNQFYLDNQLEDLTMQVDSDAGAKIEEMKEGINHHHEQLLSDEETKQKVEKV
CCCHHHHHCCCEEECCCHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
DELLMNYQPVTDSELKYQKIDSDFADRYREELLQYQASLMEIAESTADETLSQSIEQTAD
HHHHHCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTGATGETILQSNFIGLKNYGKYLQDNRMWGALWNTTFFTVITVALELVIGVCIALLINR
CCCCCCHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFKGRGIIRASVLIPWAIPTAVAAMMWGFLFDGQSGIVAHYLEALHIIPDASWLLSTSDG
HHCCCCEEEEHEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCC
GMFSIILADVWKTTPYMALLILAGLQTIPESLYEASDVDGANKFQQFWKITLPLLKSSIL
CEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
VALLFRTLDAFRVFDLIYVLTGGGPANATESISVYAYKTLFAQQNFGEGSVLSVIVFLFV
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
AIISFIYVKLIGSDLFAGRTK
HHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKKNKRGFQLNEKQLGYAMVLPSLILVCIVVLWPVAQSFYNSLFDYRLNDPNRSELMLSA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
NIDLERYVDNQFYLDNQLEDLTMQVDSDAGAKIEEMKEGINHHHEQLLSDEETKQKVEKV
CCCHHHHHCCCEEECCCHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
DELLMNYQPVTDSELKYQKIDSDFADRYREELLQYQASLMEIAESTADETLSQSIEQTAD
HHHHHCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTGATGETILQSNFIGLKNYGKYLQDNRMWGALWNTTFFTVITVALELVIGVCIALLINR
CCCCCCHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFKGRGIIRASVLIPWAIPTAVAAMMWGFLFDGQSGIVAHYLEALHIIPDASWLLSTSDG
HHCCCCEEEEHEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCC
GMFSIILADVWKTTPYMALLILAGLQTIPESLYEASDVDGANKFQQFWKITLPLLKSSIL
CEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
VALLFRTLDAFRVFDLIYVLTGGGPANATESISVYAYKTLFAQQNFGEGSVLSVIVFLFV
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
AIISFIYVKLIGSDLFAGRTK
HHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]