Click here to switch to the map view.

The map label for this gene is ycfQ [C]

Identifier: 23100624

GI number: 23100624

Start: 3300876

End: 3301457

Strand: Direct

Name: ycfQ [C]

Synonym: OB3169

Alternate gene names: 23100624

Gene position: 3300876-3301457 (Clockwise)

Preceding gene: 23100622

Following gene: 23100625

Centisome position: 90.92

GC content: 32.99

Gene sequence:

>582_bases
ATGCACACAAAAGATAAAATACTATTTGAAGGAATGGAGTTATTTGCTCGTCAAGGCTATGAAGGAACCTCCATGACGAG
TATAGCTAATGCTGTTGGCATTAAGAAGTCATCTCTATACGCTCATTACAAAAATAAAGCTGGTCTGTTTTTAGATGTTA
CTCAAAAAATTTCAAGTGATTATATTGATTTTGTTAAAAAGTCTTTAATGAACGAAGGTAAAAATATTCAAGAAACACTT
TATCTCTCCTTTCTTAGTAATGTACATGACTTGGCTAATAACGATAGCAGTATAGAATTTTTTAACCGATTTATTTCATA
TCCTCCTGAAGAGTTAAAAGAAAGATTGTTAACGATAATGCTTAACAGTGAACAAACTGCACGTGCATTATTTGAAGATA
CCATTAAAAAAGGACAAGATATTGGGGAGATAACCACAGAAGTAACTGCAAAAGAAGCAGCCAATGTATTATACGGCTTG
CTAGATGGATTATCCTACGAAACAAGTTATTATACATTTGATATTATCGAAAAACACGGTGAACAGATGTGGAAAGTGTT
CTGGAGAGGAATCAAAGCCTAA

Upstream 100 bases:

>100_bases
TACTATTAATAATTAGTGTACTAAACGACCAACCTACCGAACGGTCGTTGTTAGATGAATATATCCCATCTATTACATTT
TGTCAAAGGGGAAATTTTGT

Downstream 100 bases:

>100_bases
GACAGAGGGATTGTACATAAAGTAAATACAACGTGAGCGTATTACTGCACATTACACTTGAGTTAAAATCGACTTTTTTT
GTAAGTCATATGTTTGCCAT

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcription Regulator TetR/AcrR Family; Transcription Regulator TetR/AcrR Family Protein; Tetr Family Transcriptional Regulator

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MHTKDKILFEGMELFARQGYEGTSMTSIANAVGIKKSSLYAHYKNKAGLFLDVTQKISSDYIDFVKKSLMNEGKNIQETL
YLSFLSNVHDLANNDSSIEFFNRFISYPPEELKERLLTIMLNSEQTARALFEDTIKKGQDIGEITTEVTAKEAANVLYGL
LDGLSYETSYYTFDIIEKHGEQMWKVFWRGIKA

Sequences:

>Translated_193_residues
MHTKDKILFEGMELFARQGYEGTSMTSIANAVGIKKSSLYAHYKNKAGLFLDVTQKISSDYIDFVKKSLMNEGKNIQETL
YLSFLSNVHDLANNDSSIEFFNRFISYPPEELKERLLTIMLNSEQTARALFEDTIKKGQDIGEITTEVTAKEAANVLYGL
LDGLSYETSYYTFDIIEKHGEQMWKVFWRGIKA
>Mature_193_residues
MHTKDKILFEGMELFARQGYEGTSMTSIANAVGIKKSSLYAHYKNKAGLFLDVTQKISSDYIDFVKKSLMNEGKNIQETL
YLSFLSNVHDLANNDSSIEFFNRFISYPPEELKERLLTIMLNSEQTARALFEDTIKKGQDIGEITTEVTAKEAANVLYGL
LDGLSYETSYYTFDIIEKHGEQMWKVFWRGIKA

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22086; Mature: 22086

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTKDKILFEGMELFARQGYEGTSMTSIANAVGIKKSSLYAHYKNKAGLFLDVTQKISSD
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCEEEHHHHHHHHH
YIDFVKKSLMNEGKNIQETLYLSFLSNVHDLANNDSSIEFFNRFISYPPEELKERLLTIM
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHH
LNSEQTARALFEDTIKKGQDIGEITTEVTAKEAANVLYGLLDGLSYETSYYTFDIIEKHG
HCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
EQMWKVFWRGIKA
HHHHHHHHHHCCC
>Mature Secondary Structure
MHTKDKILFEGMELFARQGYEGTSMTSIANAVGIKKSSLYAHYKNKAGLFLDVTQKISSD
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCEEEHHHHHHHHH
YIDFVKKSLMNEGKNIQETLYLSFLSNVHDLANNDSSIEFFNRFISYPPEELKERLLTIM
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHH
LNSEQTARALFEDTIKKGQDIGEITTEVTAKEAANVLYGLLDGLSYETSYYTFDIIEKHG
HCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
EQMWKVFWRGIKA
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA