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The map label for this gene is xynB [H]

Identifier: 23100580

GI number: 23100580

Start: 3257488

End: 3259098

Strand: Direct

Name: xynB [H]

Synonym: OB3125

Alternate gene names: 23100580

Gene position: 3257488-3259098 (Clockwise)

Preceding gene: 23100579

Following gene: 23100594

Centisome position: 89.72

GC content: 37.31

Gene sequence:

>1611_bases
ATGACAAACATTAAAAATCCTATTTTAACAGGGTTTAACCCTGACCCAAGTATTTGTAGAGCTGGAGAAGATTATTACAT
TGCTGTTTCCACCTTTGAGTGGTTTCCCGGTGTTGGAATCTATCATTCTAGAGATCTGAAAAACTGGAAACTGGTATCTA
GACCTTTAAACCGCCTCTCTCAATTGAATATGATGGGAAATCCAAATTCTGGAGGTGTCTGGGCTCCAGCATTGTCCTAT
AAGGATGGGAAATTCTGGCTTATCTATACGGATGTGAAAGTAACTGGAGGACAATGGAAAGATTGTCATAACTACCTCGT
TACGTGTAACTCGATTGATGGAGAATGGTCCGAACCTATATATTTAAACAGCTCTGGATTTGACCCATCACTGTTTCATG
ATGAAGACGGCAAGAAATACTTAGTAAATATGGTTTGGGATTCCCGAATAAGCACTCATCCGTTTTATGGAATTGTTCTG
CAAGAATATGATTCAGTGAAAGGAAAGTTAGTAGGAAAAAAAGAGATTATCTTTAAAGGAACAGATGTTAAGCTTACCGA
AGCACCACACCTTTATAAAATTAATGATTACTACTATCTTCTAACAGCTGAAGGAGGGACTAGATATGATCATCAAGCTA
CAATTGCCCGATCCAAAAATTTACATGGACCATATGAAGTCCACCCCGATAATCCATTAATTAGTTCACATTCACATCCT
AGAAATCCCTTACAAAAAGCTGGACACGCATCTATTGTTCAAACGCATACAGATGAATGGTTTATGGTTCACCTTACTGG
TCGACCATTACCAAAGGAAAACCAACCCATTTTAGATCCGAGAGGCTATTGTCCATTAGGAAGAGAAACAGCAATTCAAC
GGTTGGAATGGAAAAATGAATGGCCGTATGTAGTCGGAGGAAATCAACCTTCGATGGAAATAGAAGGACCCAAAATCCCA
GAATCATCCGCCGATGTACAACTATCTGGCATAGATGATTTTGACGAAAATGAATTAAATCTTAATTACCAAACTCTACG
AATTCCATTAAACGAAAATATTAAGACGTTAACTGAACGCCCAGGTCATTTACGTCTATATGGTAGAGAATCGCTAACGT
CAACATTTACTCAAGCTTTTGTAGCTCGGAGGTGGCAACACTTTGCATTTACTGCAGAAACTAAAGTTGATTTCCAACCA
ACATCATTTCAACAAGGGGCTGGTTTGGTTAATTACTATAACACTGAAAACTGGTCTGCACTTCAAATAACCTGGGATGA
ACAAAAAGGAAAAGTGCTTTCTCTAACAACATGCGATAACTTTAAATTTGAGCAACCTTTGCTTTCTAAGGAAATTGAAA
TACCAGATGAACAGGGAGATGTATATCTAAAAGTAGTAGTTAACTACAATAATTATCAGTATTTTTACTCATTTAATGGT
AATGATTGGATTGCTATACCTATTACCCTACAATCTTACAAACTATCTGATGATTACGTTAAAGGTGGAGGATTCTTTAC
CGGCGCCTTTGTTGGGATGCAATGCCAAGATACAAGTGGTGAAGGAATTCATGCTGATTTTGATTATTTCTATTATCAAC
CTAAGATATAA

Upstream 100 bases:

>100_bases
AAACGAAGTAATCCGTGTGAAGTAAAGCAATGGATCCATGATAAACCTAAGTTTTTTCGAACAATAATCCACCATGAAAA
ATAAAAAATGAGGTGAAATA

Downstream 100 bases:

>100_bases
AAAAGGATGCTATTTGTATTTATTAGTTATTTAATTTAACACTTTATTGTAAACGCTTAATGAATGACTCTATTACTAAA
TTTTTCTTTGTTAGCAAGCT

Product: xylan 1,4-beta-xylosidase

Products: NA

Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]

Number of amino acids: Translated: 536; Mature: 535

Protein sequence:

>536_residues
MTNIKNPILTGFNPDPSICRAGEDYYIAVSTFEWFPGVGIYHSRDLKNWKLVSRPLNRLSQLNMMGNPNSGGVWAPALSY
KDGKFWLIYTDVKVTGGQWKDCHNYLVTCNSIDGEWSEPIYLNSSGFDPSLFHDEDGKKYLVNMVWDSRISTHPFYGIVL
QEYDSVKGKLVGKKEIIFKGTDVKLTEAPHLYKINDYYYLLTAEGGTRYDHQATIARSKNLHGPYEVHPDNPLISSHSHP
RNPLQKAGHASIVQTHTDEWFMVHLTGRPLPKENQPILDPRGYCPLGRETAIQRLEWKNEWPYVVGGNQPSMEIEGPKIP
ESSADVQLSGIDDFDENELNLNYQTLRIPLNENIKTLTERPGHLRLYGRESLTSTFTQAFVARRWQHFAFTAETKVDFQP
TSFQQGAGLVNYYNTENWSALQITWDEQKGKVLSLTTCDNFKFEQPLLSKEIEIPDEQGDVYLKVVVNYNNYQYFYSFNG
NDWIAIPITLQSYKLSDDYVKGGGFFTGAFVGMQCQDTSGEGIHADFDYFYYQPKI

Sequences:

>Translated_536_residues
MTNIKNPILTGFNPDPSICRAGEDYYIAVSTFEWFPGVGIYHSRDLKNWKLVSRPLNRLSQLNMMGNPNSGGVWAPALSY
KDGKFWLIYTDVKVTGGQWKDCHNYLVTCNSIDGEWSEPIYLNSSGFDPSLFHDEDGKKYLVNMVWDSRISTHPFYGIVL
QEYDSVKGKLVGKKEIIFKGTDVKLTEAPHLYKINDYYYLLTAEGGTRYDHQATIARSKNLHGPYEVHPDNPLISSHSHP
RNPLQKAGHASIVQTHTDEWFMVHLTGRPLPKENQPILDPRGYCPLGRETAIQRLEWKNEWPYVVGGNQPSMEIEGPKIP
ESSADVQLSGIDDFDENELNLNYQTLRIPLNENIKTLTERPGHLRLYGRESLTSTFTQAFVARRWQHFAFTAETKVDFQP
TSFQQGAGLVNYYNTENWSALQITWDEQKGKVLSLTTCDNFKFEQPLLSKEIEIPDEQGDVYLKVVVNYNNYQYFYSFNG
NDWIAIPITLQSYKLSDDYVKGGGFFTGAFVGMQCQDTSGEGIHADFDYFYYQPKI
>Mature_535_residues
TNIKNPILTGFNPDPSICRAGEDYYIAVSTFEWFPGVGIYHSRDLKNWKLVSRPLNRLSQLNMMGNPNSGGVWAPALSYK
DGKFWLIYTDVKVTGGQWKDCHNYLVTCNSIDGEWSEPIYLNSSGFDPSLFHDEDGKKYLVNMVWDSRISTHPFYGIVLQ
EYDSVKGKLVGKKEIIFKGTDVKLTEAPHLYKINDYYYLLTAEGGTRYDHQATIARSKNLHGPYEVHPDNPLISSHSHPR
NPLQKAGHASIVQTHTDEWFMVHLTGRPLPKENQPILDPRGYCPLGRETAIQRLEWKNEWPYVVGGNQPSMEIEGPKIPE
SSADVQLSGIDDFDENELNLNYQTLRIPLNENIKTLTERPGHLRLYGRESLTSTFTQAFVARRWQHFAFTAETKVDFQPT
SFQQGAGLVNYYNTENWSALQITWDEQKGKVLSLTTCDNFKFEQPLLSKEIEIPDEQGDVYLKVVVNYNNYQYFYSFNGN
DWIAIPITLQSYKLSDDYVKGGGFFTGAFVGMQCQDTSGEGIHADFDYFYYQPKI

Specific function: Unknown

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=533, Percent_Identity=54.7842401500938, Blast_Score=623, Evalue=1e-180,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37 [H]

Molecular weight: Translated: 61366; Mature: 61235

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNIKNPILTGFNPDPSICRAGEDYYIAVSTFEWFPGVGIYHSRDLKNWKLVSRPLNRLS
CCCCCCCEEECCCCCHHHHCCCCCEEEEEEEECCCCCCCEEECCCCCCCHHHHHHHHHHH
QLNMMGNPNSGGVWAPALSYKDGKFWLIYTDVKVTGGQWKDCHNYLVTCNSIDGEWSEPI
HEEECCCCCCCCEEECEEECCCCEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCE
YLNSSGFDPSLFHDEDGKKYLVNMVWDSRISTHPFYGIVLQEYDSVKGKLVGKKEIIFKG
EEECCCCCCCCEECCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCCEEEECCEEEEEEC
TDVKLTEAPHLYKINDYYYLLTAEGGTRYDHQATIARSKNLHGPYEVHPDNPLISSHSHP
CCEEEECCCCEEEECCEEEEEECCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCC
RNPLQKAGHASIVQTHTDEWFMVHLTGRPLPKENQPILDPRGYCPLGRETAIQRLEWKNE
CCHHHHCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
WPYVVGGNQPSMEIEGPKIPESSADVQLSGIDDFDENELNLNYQTLRIPLNENIKTLTER
CCEEECCCCCCEEECCCCCCCCCCCEEEECCCCCCCCEEEEEEEEEEEECCCCHHHHHCC
PGHLRLYGRESLTSTFTQAFVARRWQHFAFTAETKVDFQPTSFQQGAGLVNYYNTENWSA
CCEEEEEECHHHHHHHHHHHHHHHHHEEEEEECCEEECCCCCCCCCCCEEEEECCCCEEE
LQITWDEQKGKVLSLTTCDNFKFEQPLLSKEIEIPDEQGDVYLKVVVNYNNYQYFYSFNG
EEEEEECCCCCEEEEEECCCCCCCCCHHCCCCCCCCCCCCEEEEEEEECCCEEEEEEECC
NDWIAIPITLQSYKLSDDYVKGGGFFTGAFVGMQCQDTSGEGIHADFDYFYYQPKI
CCEEEEEEEEEEEECCCCEEECCCEEEEEEEEEEEECCCCCCEEEECEEEEEECCC
>Mature Secondary Structure 
TNIKNPILTGFNPDPSICRAGEDYYIAVSTFEWFPGVGIYHSRDLKNWKLVSRPLNRLS
CCCCCCEEECCCCCHHHHCCCCCEEEEEEEECCCCCCCEEECCCCCCCHHHHHHHHHHH
QLNMMGNPNSGGVWAPALSYKDGKFWLIYTDVKVTGGQWKDCHNYLVTCNSIDGEWSEPI
HEEECCCCCCCCEEECEEECCCCEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCE
YLNSSGFDPSLFHDEDGKKYLVNMVWDSRISTHPFYGIVLQEYDSVKGKLVGKKEIIFKG
EEECCCCCCCCEECCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCCEEEECCEEEEEEC
TDVKLTEAPHLYKINDYYYLLTAEGGTRYDHQATIARSKNLHGPYEVHPDNPLISSHSHP
CCEEEECCCCEEEECCEEEEEECCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCC
RNPLQKAGHASIVQTHTDEWFMVHLTGRPLPKENQPILDPRGYCPLGRETAIQRLEWKNE
CCHHHHCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
WPYVVGGNQPSMEIEGPKIPESSADVQLSGIDDFDENELNLNYQTLRIPLNENIKTLTER
CCEEECCCCCCEEECCCCCCCCCCCEEEECCCCCCCCEEEEEEEEEEEECCCCHHHHHCC
PGHLRLYGRESLTSTFTQAFVARRWQHFAFTAETKVDFQPTSFQQGAGLVNYYNTENWSA
CCEEEEEECHHHHHHHHHHHHHHHHHEEEEEECCEEECCCCCCCCCCCEEEEECCCCEEE
LQITWDEQKGKVLSLTTCDNFKFEQPLLSKEIEIPDEQGDVYLKVVVNYNNYQYFYSFNG
EEEEEECCCCCEEEEEECCCCCCCCCHHCCCCCCCCCCCCEEEEEEEECCCEEEEEEECC
NDWIAIPITLQSYKLSDDYVKGGGFFTGAFVGMQCQDTSGEGIHADFDYFYYQPKI
CCEEEEEEEEEEEECCCCEEECCCEEEEEEEEEEEECCCCCCEEEECEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]