Click here to switch to the map view.

The map label for this gene is dppC [H]

Identifier: 23100522

GI number: 23100522

Start: 3184751

End: 3185653

Strand: Direct

Name: dppC [H]

Synonym: OB3067

Alternate gene names: 23100522

Gene position: 3184751-3185653 (Clockwise)

Preceding gene: 28563948

Following gene: 23100523

Centisome position: 87.72

GC content: 37.21

Gene sequence:

>903_bases
ATGAGCCAACCAACTGAACACATTGAAACCCCCCAAACTGCTCATAAGCCACCTAATCCTAGGCTGAAAAGTTGGAAAAT
TGTTTTTAATAAGTTTAAGAAAAATAAGTCAGCTATGATTGGTGGATTTTTAATTATTTTCTTATTAATAATTGCAATTG
TTGGGCCTTTTTTCACTCCTTATGAACCTTATGAACAAAATATCGTGAACAAATTACAAAGCCCTTCTGCTGAACATTGG
TTTGGAACAGATAACTTTGGAAGAGATATTTTTAGTCGTGTCATTCAAGGGACAGGCCTAACACTGACGATTGGATTTTT
CTCCATAGCTTTAGGTGCAACTATGGGTGTACTTTTTGGATTACTTGCAGGTTTTTATGGTAAGCGTACGGATAGCATAA
TTATGCGAATCATGGATATTTTACTTGCTTTCCCTGGTATTCTTTTAGCTTTAGCTATTGTTACTGTATTAGGAGGAAGT
ATCGCTAACTTAATTATAGCTGTTGCCGTTTCAAGTATTCCTGTATTTGCACGTATCGTTCGCGGATCTGTTTTATCTGT
TAAGAATTTAGAATATATCGATGCTATGCGTGCACTTGGTGCTAGTGATACCCGGATTATTTTTAAACACATTTTTCCGA
ATATTACCTCTCCTATCATCGTTCAGGCAACTCTGAGTATTGCCACAGCAATTTTATCTGCAAGTGGATTATCTTTCCTC
GGTTTAGGTGCACAACCGCCATCGGCTGAATGGGGTGCGATGCTTAGTGATGGAAGAAACTACCTATATAATGCTGGCCA
TGTTGCACTCTTTCCTGGATTAGCTATTGTAGTTGCTGTATTAGCATTTAATTTACTAGGTGATGGATTAAGAGATGCAT
TTGATCCAAAAACGAAAGAATAG

Upstream 100 bases:

>100_bases
ATTCTCCCTTTCCCAACATTCACCTTATTGTAAATCAATAAGTTCATGATATAATCGTACAGATAGTATACTTAATTGAT
AGAAAGGAAGTTAACAAACT

Downstream 100 bases:

>100_bases
GAAGAGGTGAATATCTATGTTTAAATTTATTATTCGAAGATTACTGCAAACTATTCCCGTACTTATTGGGGTATCTATAT
TAGTATTTAGTATGATGCAT

Product: oligopeptide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MSQPTEHIETPQTAHKPPNPRLKSWKIVFNKFKKNKSAMIGGFLIIFLLIIAIVGPFFTPYEPYEQNIVNKLQSPSAEHW
FGTDNFGRDIFSRVIQGTGLTLTIGFFSIALGATMGVLFGLLAGFYGKRTDSIIMRIMDILLAFPGILLALAIVTVLGGS
IANLIIAVAVSSIPVFARIVRGSVLSVKNLEYIDAMRALGASDTRIIFKHIFPNITSPIIVQATLSIATAILSASGLSFL
GLGAQPPSAEWGAMLSDGRNYLYNAGHVALFPGLAIVVAVLAFNLLGDGLRDAFDPKTKE

Sequences:

>Translated_300_residues
MSQPTEHIETPQTAHKPPNPRLKSWKIVFNKFKKNKSAMIGGFLIIFLLIIAIVGPFFTPYEPYEQNIVNKLQSPSAEHW
FGTDNFGRDIFSRVIQGTGLTLTIGFFSIALGATMGVLFGLLAGFYGKRTDSIIMRIMDILLAFPGILLALAIVTVLGGS
IANLIIAVAVSSIPVFARIVRGSVLSVKNLEYIDAMRALGASDTRIIFKHIFPNITSPIIVQATLSIATAILSASGLSFL
GLGAQPPSAEWGAMLSDGRNYLYNAGHVALFPGLAIVVAVLAFNLLGDGLRDAFDPKTKE
>Mature_299_residues
SQPTEHIETPQTAHKPPNPRLKSWKIVFNKFKKNKSAMIGGFLIIFLLIIAIVGPFFTPYEPYEQNIVNKLQSPSAEHWF
GTDNFGRDIFSRVIQGTGLTLTIGFFSIALGATMGVLFGLLAGFYGKRTDSIIMRIMDILLAFPGILLALAIVTVLGGSI
ANLIIAVAVSSIPVFARIVRGSVLSVKNLEYIDAMRALGASDTRIIFKHIFPNITSPIIVQATLSIATAILSASGLSFLG
LGAQPPSAEWGAMLSDGRNYLYNAGHVALFPGLAIVVAVLAFNLLGDGLRDAFDPKTKE

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=285, Percent_Identity=50.8771929824561, Blast_Score=288, Evalue=3e-79,
Organism=Escherichia coli, GI1787760, Length=289, Percent_Identity=40.8304498269896, Blast_Score=238, Evalue=5e-64,
Organism=Escherichia coli, GI1789964, Length=306, Percent_Identity=44.4444444444444, Blast_Score=211, Evalue=4e-56,
Organism=Escherichia coli, GI1789889, Length=241, Percent_Identity=40.2489626556017, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1787498, Length=277, Percent_Identity=36.101083032491, Blast_Score=171, Evalue=5e-44,
Organism=Escherichia coli, GI1787549, Length=292, Percent_Identity=35.2739726027397, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI1788505, Length=224, Percent_Identity=30.3571428571429, Blast_Score=113, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32335; Mature: 32203

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQPTEHIETPQTAHKPPNPRLKSWKIVFNKFKKNKSAMIGGFLIIFLLIIAIVGPFFTP
CCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC
YEPYEQNIVNKLQSPSAEHWFGTDNFGRDIFSRVIQGTGLTLTIGFFSIALGATMGVLFG
CCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHH
LLAGFYGKRTDSIIMRIMDILLAFPGILLALAIVTVLGGSIANLIIAVAVSSIPVFARIV
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGSVLSVKNLEYIDAMRALGASDTRIIFKHIFPNITSPIIVQATLSIATAILSASGLSFL
HCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHE
GLGAQPPSAEWGAMLSDGRNYLYNAGHVALFPGLAIVVAVLAFNLLGDGLRDAFDPKTKE
ECCCCCCCCHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SQPTEHIETPQTAHKPPNPRLKSWKIVFNKFKKNKSAMIGGFLIIFLLIIAIVGPFFTP
CCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC
YEPYEQNIVNKLQSPSAEHWFGTDNFGRDIFSRVIQGTGLTLTIGFFSIALGATMGVLFG
CCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHH
LLAGFYGKRTDSIIMRIMDILLAFPGILLALAIVTVLGGSIANLIIAVAVSSIPVFARIV
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGSVLSVKNLEYIDAMRALGASDTRIIFKHIFPNITSPIIVQATLSIATAILSASGLSFL
HCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHE
GLGAQPPSAEWGAMLSDGRNYLYNAGHVALFPGLAIVVAVLAFNLLGDGLRDAFDPKTKE
ECCCCCCCCHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]