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The map label for this gene is dppB [H]

Identifier: 23100523

GI number: 23100523

Start: 3185670

End: 3186626

Strand: Direct

Name: dppB [H]

Synonym: OB3068

Alternate gene names: 23100523

Gene position: 3185670-3186626 (Clockwise)

Preceding gene: 23100522

Following gene: 23100524

Centisome position: 87.75

GC content: 36.68

Gene sequence:

>957_bases
ATGTTTAAATTTATTATTCGAAGATTACTGCAAACTATTCCCGTACTTATTGGGGTATCTATATTAGTATTTAGTATGAT
GCATTTAATCCCTGGTGATCCAGCACAAATATTAGCAGGTGAAAGTGCACCAAAAGAACAAGTAGAGAACATTCGAGAAA
GACTAGGTTTAAACGAACCAATTCCAATGCAATATTTCTCATATGTCACAGATGCTGTGCAAGGTGACTTAGGTAGCTCA
ATGAGAAGTGGTCGTCCTGTCTCAGAAGAAATCGGAGCAAGATTCTGGGTCACTGTTGAGTTTTCGATATATGCCACTAT
TTTAGGTGTATTTTTAGGACTAATCGCTGGTATTGTATCAGCAACGAGAAAGTATACTTTCTTAGATACATCTCTAATGC
TAGTTGCTTTATTTGGACTATCCATGCCGAATTTCTGGTTAGGTTTAATGTTAATTCAATGGTTCTCTATAGGTATTGAT
TTACCAGCATGGGTACCATTCTTTGACAATACGAGTTGGTTTAGTCCATCCGGATGGGGAAATTTTGATCAACTAGTTCT
TCCAGTTATAACTTTAGGAACAGGTAGTGCAGCTATCATTGCTAGAATGACAAGGTCCAGTATGCTAGATGTTATTGGAC
AAGATTATATACGTACAGCCCGTGCAAAAGGGGTAAAAGAAACAATCGTTATTTACAGACATGCATTAAAAAATGCGTTG
ATCCCAGTAGTTACAGTCGTTGGGCTACAATTTGGTAGTCTACTTGGCGGAGCAGTACTTGCTGAATCCGTATTTGCAAT
TAATGGTATGGGTAAATTAATTATTGATTCTATTACTGCTCGTGACTTTCCAGTTGTACAAGGTACTATTCTTGTAGTTG
CTCTATTATTCGTTCTCGTAAATCTATTAGTAGATATTACGTACAATTTCCTTAATAAACGAATCGACCTCGATTAA

Upstream 100 bases:

>100_bases
TTAGCTATTGTAGTTGCTGTATTAGCATTTAATTTACTAGGTGATGGATTAAGAGATGCATTTGATCCAAAAACGAAAGA
ATAGGAAGAGGTGAATATCT

Downstream 100 bases:

>100_bases
TATATCAGTTCTACAAGAAGTATGAATAAGAGAAAGGAGCAATATATAATGACAAGTACACCAAACACTTATGATAATAT
ATTAGAGATTAATGAGTTAC

Product: oligopeptide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MFKFIIRRLLQTIPVLIGVSILVFSMMHLIPGDPAQILAGESAPKEQVENIRERLGLNEPIPMQYFSYVTDAVQGDLGSS
MRSGRPVSEEIGARFWVTVEFSIYATILGVFLGLIAGIVSATRKYTFLDTSLMLVALFGLSMPNFWLGLMLIQWFSIGID
LPAWVPFFDNTSWFSPSGWGNFDQLVLPVITLGTGSAAIIARMTRSSMLDVIGQDYIRTARAKGVKETIVIYRHALKNAL
IPVVTVVGLQFGSLLGGAVLAESVFAINGMGKLIIDSITARDFPVVQGTILVVALLFVLVNLLVDITYNFLNKRIDLD

Sequences:

>Translated_318_residues
MFKFIIRRLLQTIPVLIGVSILVFSMMHLIPGDPAQILAGESAPKEQVENIRERLGLNEPIPMQYFSYVTDAVQGDLGSS
MRSGRPVSEEIGARFWVTVEFSIYATILGVFLGLIAGIVSATRKYTFLDTSLMLVALFGLSMPNFWLGLMLIQWFSIGID
LPAWVPFFDNTSWFSPSGWGNFDQLVLPVITLGTGSAAIIARMTRSSMLDVIGQDYIRTARAKGVKETIVIYRHALKNAL
IPVVTVVGLQFGSLLGGAVLAESVFAINGMGKLIIDSITARDFPVVQGTILVVALLFVLVNLLVDITYNFLNKRIDLD
>Mature_318_residues
MFKFIIRRLLQTIPVLIGVSILVFSMMHLIPGDPAQILAGESAPKEQVENIRERLGLNEPIPMQYFSYVTDAVQGDLGSS
MRSGRPVSEEIGARFWVTVEFSIYATILGVFLGLIAGIVSATRKYTFLDTSLMLVALFGLSMPNFWLGLMLIQWFSIGID
LPAWVPFFDNTSWFSPSGWGNFDQLVLPVITLGTGSAAIIARMTRSSMLDVIGQDYIRTARAKGVKETIVIYRHALKNAL
IPVVTVVGLQFGSLLGGAVLAESVFAINGMGKLIIDSITARDFPVVQGTILVVALLFVLVNLLVDITYNFLNKRIDLD

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=315, Percent_Identity=45.0793650793651, Blast_Score=284, Evalue=6e-78,
Organism=Escherichia coli, GI1789965, Length=336, Percent_Identity=44.047619047619, Blast_Score=266, Evalue=2e-72,
Organism=Escherichia coli, GI1787761, Length=307, Percent_Identity=41.3680781758958, Blast_Score=204, Evalue=8e-54,
Organism=Escherichia coli, GI1789888, Length=318, Percent_Identity=33.3333333333333, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI1787497, Length=319, Percent_Identity=34.1692789968652, Blast_Score=185, Evalue=3e-48,
Organism=Escherichia coli, GI1787550, Length=260, Percent_Identity=30.7692307692308, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1788504, Length=369, Percent_Identity=25.7452574525745, Blast_Score=125, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34951; Mature: 34951

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKFIIRRLLQTIPVLIGVSILVFSMMHLIPGDPAQILAGESAPKEQVENIRERLGLNEP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCC
IPMQYFSYVTDAVQGDLGSSMRSGRPVSEEIGARFWVTVEFSIYATILGVFLGLIAGIVS
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHH
ATRKYTFLDTSLMLVALFGLSMPNFWLGLMLIQWFSIGIDLPAWVPFFDNTSWFSPSGWG
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
NFDQLVLPVITLGTGSAAIIARMTRSSMLDVIGQDYIRTARAKGVKETIVIYRHALKNAL
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
IPVVTVVGLQFGSLLGGAVLAESVFAINGMGKLIIDSITARDFPVVQGTILVVALLFVLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
NLLVDITYNFLNKRIDLD
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MFKFIIRRLLQTIPVLIGVSILVFSMMHLIPGDPAQILAGESAPKEQVENIRERLGLNEP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCC
IPMQYFSYVTDAVQGDLGSSMRSGRPVSEEIGARFWVTVEFSIYATILGVFLGLIAGIVS
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHH
ATRKYTFLDTSLMLVALFGLSMPNFWLGLMLIQWFSIGIDLPAWVPFFDNTSWFSPSGWG
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
NFDQLVLPVITLGTGSAAIIARMTRSSMLDVIGQDYIRTARAKGVKETIVIYRHALKNAL
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
IPVVTVVGLQFGSLLGGAVLAESVFAINGMGKLIIDSITARDFPVVQGTILVVALLFVLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
NLLVDITYNFLNKRIDLD
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]