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The map label for this gene is ypdF [C]

Identifier: 23100405

GI number: 23100405

Start: 3056974

End: 3058170

Strand: Reverse

Name: ypdF [C]

Synonym: OB2950

Alternate gene names: 23100405

Gene position: 3058170-3056974 (Counterclockwise)

Preceding gene: 23100406

Following gene: 23100404

Centisome position: 84.23

GC content: 41.19

Gene sequence:

>1197_bases
GTGAATGTAGAAGTTGCAGAGTATATGGATAGGATGAAGCGTACGAAAGCAAAGATGGCTGAGAAAGGAATAGAAGTACT
ACTAATTACAGACCCGGCAAATATGAACTATTTAACGGGATTCGATGGCTGGTCATTCTATGTCGATCAAATGTTGGTAT
TGATGGATGATGAGGAGCAACCGATTTGGATAGGAAGAACAGCAGATGCAAATGCGGCAAAGGTAACGACATGGCTGTTT
CATGAAAATGTTATTCCTTATCCAGATACCTATGTTCATTCTCAAACGAGGCACCCTATGGACTTTGTAGCAGAAATCTT
AACTCAGATTGGTCAAGATAAACGACATATTGGTGTCGAGATGGATAGTTATTATTTTTCAGCAAAATGTTTTCAACAAT
TGAATAACGGTCTGCCGAATGCAACATTTTTGGATGGTTCACTGATCGTAAACTGGGTACGTATCATTAAGTCACCTGCA
GAAATAATGAAGATGCAAAAAGCTGGGGTTATTGGAGAACGTGCTATGCGTGAAGGAATCGAAATGGTAAATGCAGGGGT
TAGAGGTTGTGATGTTGCTGCTAAGATAAGCCATGCACAATTAAGTGGTACGCCTGAGTTTGGGGGAGATTATCCAGCGA
TTGTACCTTTACTACCAGCAGGAGAGAGGACTTCAACCCCGCATCTTACATGGACAGATGAACCATATCAGCACGGTGAA
ACAGTAATTTTAGAATTGGCAGGTTGTTATCAACGCTATCATGCTCCAGTAGCTCGAACTGTTCAAATTGGTCAACCGTC
GACAAATATGAAGAACTTATCCGAAGTAGTTATCGAAGGGTTGAATGCTTGTCTAGACTTTATACAGCCAGGAGTAGCTT
GTGAAGAAATTGAAGCAGTTTGGAGGAAAACGGTGGAGAAACACGGCGTTACGAAAGAGTCGAGATTAGGATATTCGATG
GGATTAAATTATCCGCCAGATTGGGGAGAGCATACAGCAAGTATCCGAACCGGAGATAAAACAATCCTTGTACCAAATAT
GACTTTTCATTTAATACCAGCGATCTGGTCCGAAGGCGATAGTTTTGAGATCAGTGAATCATTCCGTGTAACAGATAGTG
GTTGTGAGACCTTTGTAAATCTGCCTAGAGAACTGATGATTAAAGATGGGTTTGCTAACCTAGATTTTGTCGGTTAG

Upstream 100 bases:

>100_bases
AAACTTCTAAAAACTTTCATACAAAATGGTGAATATCATTTTAAATATTTTGAAAATATAATGAATTAACAATCAAAAAA
ATAAGAAGGTGGTGTTTGAC

Downstream 100 bases:

>100_bases
GAATAAAAGTATATGGTGGCGTGGATGCAAGTATCGTAACAAACAATTTAAAAAAGGAAGTGATTATATGACAGATAAGA
AGAAAGTAAACGTAGGTACA

Product: Xaa-Pro aminopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 398

Protein sequence:

>398_residues
MNVEVAEYMDRMKRTKAKMAEKGIEVLLITDPANMNYLTGFDGWSFYVDQMLVLMDDEEQPIWIGRTADANAAKVTTWLF
HENVIPYPDTYVHSQTRHPMDFVAEILTQIGQDKRHIGVEMDSYYFSAKCFQQLNNGLPNATFLDGSLIVNWVRIIKSPA
EIMKMQKAGVIGERAMREGIEMVNAGVRGCDVAAKISHAQLSGTPEFGGDYPAIVPLLPAGERTSTPHLTWTDEPYQHGE
TVILELAGCYQRYHAPVARTVQIGQPSTNMKNLSEVVIEGLNACLDFIQPGVACEEIEAVWRKTVEKHGVTKESRLGYSM
GLNYPPDWGEHTASIRTGDKTILVPNMTFHLIPAIWSEGDSFEISESFRVTDSGCETFVNLPRELMIKDGFANLDFVG

Sequences:

>Translated_398_residues
MNVEVAEYMDRMKRTKAKMAEKGIEVLLITDPANMNYLTGFDGWSFYVDQMLVLMDDEEQPIWIGRTADANAAKVTTWLF
HENVIPYPDTYVHSQTRHPMDFVAEILTQIGQDKRHIGVEMDSYYFSAKCFQQLNNGLPNATFLDGSLIVNWVRIIKSPA
EIMKMQKAGVIGERAMREGIEMVNAGVRGCDVAAKISHAQLSGTPEFGGDYPAIVPLLPAGERTSTPHLTWTDEPYQHGE
TVILELAGCYQRYHAPVARTVQIGQPSTNMKNLSEVVIEGLNACLDFIQPGVACEEIEAVWRKTVEKHGVTKESRLGYSM
GLNYPPDWGEHTASIRTGDKTILVPNMTFHLIPAIWSEGDSFEISESFRVTDSGCETFVNLPRELMIKDGFANLDFVG
>Mature_398_residues
MNVEVAEYMDRMKRTKAKMAEKGIEVLLITDPANMNYLTGFDGWSFYVDQMLVLMDDEEQPIWIGRTADANAAKVTTWLF
HENVIPYPDTYVHSQTRHPMDFVAEILTQIGQDKRHIGVEMDSYYFSAKCFQQLNNGLPNATFLDGSLIVNWVRIIKSPA
EIMKMQKAGVIGERAMREGIEMVNAGVRGCDVAAKISHAQLSGTPEFGGDYPAIVPLLPAGERTSTPHLTWTDEPYQHGE
TVILELAGCYQRYHAPVARTVQIGQPSTNMKNLSEVVIEGLNACLDFIQPGVACEEIEAVWRKTVEKHGVTKESRLGYSM
GLNYPPDWGEHTASIRTGDKTILVPNMTFHLIPAIWSEGDSFEISESFRVTDSGCETFVNLPRELMIKDGFANLDFVG

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24 family [H]

Homologues:

Organism=Escherichia coli, GI1788728, Length=243, Percent_Identity=22.6337448559671, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789275, Length=249, Percent_Identity=25.7028112449799, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 44534; Mature: 44534

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVEVAEYMDRMKRTKAKMAEKGIEVLLITDPANMNYLTGFDGWSFYVDQMLVLMDDEEQ
CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCCHHHHHHHEEEEECCCCC
PIWIGRTADANAAKVTTWLFHENVIPYPDTYVHSQTRHPMDFVAEILTQIGQDKRHIGVE
CEEEECCCCCCCHHEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCCE
MDSYYFSAKCFQQLNNGLPNATFLDGSLIVNWVRIIKSPAEIMKMQKAGVIGERAMREGI
EHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHH
EMVNAGVRGCDVAAKISHAQLSGTPEFGGDYPAIVPLLPAGERTSTPHLTWTDEPYQHGE
HHHHCCCCCCCHHHHHCHHHCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCHHCCC
TVILELAGCYQRYHAPVARTVQIGQPSTNMKNLSEVVIEGLNACLDFIQPGVACEEIEAV
EEEEHHHHHHHHHCCCHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
WRKTVEKHGVTKESRLGYSMGLNYPPDWGEHTASIRTGDKTILVPNMTFHLIPAIWSEGD
HHHHHHHHCCCHHHHCCHHCCCCCCCCCCCCCCEEECCCEEEEECCCHHHHHHHHHCCCC
SFEISESFRVTDSGCETFVNLPRELMIKDGFANLDFVG
CEEECCCEEECCHHHHHHHHCCHHHEEECCCCCCCCCC
>Mature Secondary Structure
MNVEVAEYMDRMKRTKAKMAEKGIEVLLITDPANMNYLTGFDGWSFYVDQMLVLMDDEEQ
CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCCHHHHHHHEEEEECCCCC
PIWIGRTADANAAKVTTWLFHENVIPYPDTYVHSQTRHPMDFVAEILTQIGQDKRHIGVE
CEEEECCCCCCCHHEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCCE
MDSYYFSAKCFQQLNNGLPNATFLDGSLIVNWVRIIKSPAEIMKMQKAGVIGERAMREGI
EHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHH
EMVNAGVRGCDVAAKISHAQLSGTPEFGGDYPAIVPLLPAGERTSTPHLTWTDEPYQHGE
HHHHCCCCCCCHHHHHCHHHCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCHHCCC
TVILELAGCYQRYHAPVARTVQIGQPSTNMKNLSEVVIEGLNACLDFIQPGVACEEIEAV
EEEEHHHHHHHHHCCCHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
WRKTVEKHGVTKESRLGYSMGLNYPPDWGEHTASIRTGDKTILVPNMTFHLIPAIWSEGD
HHHHHHHHCCCHHHHCCHHCCCCCCCCCCCCCCEEECCCEEEEECCCHHHHHHHHHCCCC
SFEISESFRVTDSGCETFVNLPRELMIKDGFANLDFVG
CEEECCCEEECCHHHHHHHHCCHHHEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]