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The map label for this gene is ycbG [H]

Identifier: 23100297

GI number: 23100297

Start: 2925785

End: 2926489

Strand: Reverse

Name: ycbG [H]

Synonym: OB2842

Alternate gene names: 23100297

Gene position: 2926489-2925785 (Counterclockwise)

Preceding gene: 23100298

Following gene: 23100296

Centisome position: 80.61

GC content: 35.6

Gene sequence:

>705_bases
GTGAGTAGAGATATTAAATTAAAGTCAATAAAAAAGAATACGCTTTCAAGCTTGGTGATGGATGAGATTATCAAACTTTT
GATTGATGGAAAAATTAAACCAGGTGACAAGTTACCATCTGAATATGAATTGATGGAAATGCTTTATGTGAGTAGGGCAG
TTCTTAGAGAGGCGTTAAGTGCTCTGGAAACCTTAGGAATACTCAAAAGGAAATCGAGAGAAGGCACATATATTTCAGAT
AAAATTGGTACACGACCATTCCGTCTTATGTTAGCGTTATCATCCGATGATATAGAAACGATTATCGAAACGCGAATGAC
GCAGGAACTTGGATTTGTAACACTCGCGGCGGAAAAAATAACAGAGGAAGAGTTACAGCGACTGGAGACAACCATCTATA
ACATGAGTAATAATATTGGCAATTATGATGAGATGGATAAAGAATTTCATACTATCATTACGTCCTCTGTAATGAACAAT
GTAACTTCTGGAATTATTGAGCCATTAATGGATTTTTTCTACAAAATGTATTACACCATTTCCAAAGAACATCGAAATAT
AGATATTACGATTCAACAGCACCAAGCAATCTTTGACGCACTGAAAGATAGAGATCCATTCGAAGCGCATCGTGCCATGT
ATATCCATCTGGATCATGTACGAAAGCGTGTGAAATTAGGAAAAACAAATAATGAAGAAAATTAG

Upstream 100 bases:

>100_bases
TATTTTATTTTTTATTTGTCGGACAAATAAAAAATATATTTGACTGAAAATAAACAATATTATATACTATCCGTAAGAAT
TTAGGATAGGAGACAGGTTA

Downstream 100 bases:

>100_bases
AGGAGGATTTTTATGAATAGAAAAGCGCCAACTGGAATACTAGGATTCCCTGTGACGCCGTTTGATAACCAAGGGAATAT
AGATGAATTAGCATTATCTC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MSRDIKLKSIKKNTLSSLVMDEIIKLLIDGKIKPGDKLPSEYELMEMLYVSRAVLREALSALETLGILKRKSREGTYISD
KIGTRPFRLMLALSSDDIETIIETRMTQELGFVTLAAEKITEEELQRLETTIYNMSNNIGNYDEMDKEFHTIITSSVMNN
VTSGIIEPLMDFFYKMYYTISKEHRNIDITIQQHQAIFDALKDRDPFEAHRAMYIHLDHVRKRVKLGKTNNEEN

Sequences:

>Translated_234_residues
MSRDIKLKSIKKNTLSSLVMDEIIKLLIDGKIKPGDKLPSEYELMEMLYVSRAVLREALSALETLGILKRKSREGTYISD
KIGTRPFRLMLALSSDDIETIIETRMTQELGFVTLAAEKITEEELQRLETTIYNMSNNIGNYDEMDKEFHTIITSSVMNN
VTSGIIEPLMDFFYKMYYTISKEHRNIDITIQQHQAIFDALKDRDPFEAHRAMYIHLDHVRKRVKLGKTNNEEN
>Mature_233_residues
SRDIKLKSIKKNTLSSLVMDEIIKLLIDGKIKPGDKLPSEYELMEMLYVSRAVLREALSALETLGILKRKSREGTYISDK
IGTRPFRLMLALSSDDIETIIETRMTQELGFVTLAAEKITEEELQRLETTIYNMSNNIGNYDEMDKEFHTIITSSVMNNV
TSGIIEPLMDFFYKMYYTISKEHRNIDITIQQHQAIFDALKDRDPFEAHRAMYIHLDHVRKRVKLGKTNNEEN

Specific function: Sialic acid (NANA) and N-acetylmannosamine utilization [C]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789621, Length=246, Percent_Identity=26.8292682926829, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1786303, Length=220, Percent_Identity=26.3636363636364, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI48994955, Length=212, Percent_Identity=25.9433962264151, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790780, Length=221, Percent_Identity=25.7918552036199, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790032, Length=226, Percent_Identity=26.5486725663717, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789353, Length=233, Percent_Identity=26.1802575107296, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27159; Mature: 27028

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRDIKLKSIKKNTLSSLVMDEIIKLLIDGKIKPGDKLPSEYELMEMLYVSRAVLREALS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
ALETLGILKRKSREGTYISDKIGTRPFRLMLALSSDDIETIIETRMTQELGFVTLAAEKI
HHHHHHHHHHCCCCCCEECHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
TEEELQRLETTIYNMSNNIGNYDEMDKEFHTIITSSVMNNVTSGIIEPLMDFFYKMYYTI
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKEHRNIDITIQQHQAIFDALKDRDPFEAHRAMYIHLDHVRKRVKLGKTNNEEN
HHCCCCEEEEEHHHHHHHHHHHCCCCHHHHHHHHEEHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SRDIKLKSIKKNTLSSLVMDEIIKLLIDGKIKPGDKLPSEYELMEMLYVSRAVLREALS
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
ALETLGILKRKSREGTYISDKIGTRPFRLMLALSSDDIETIIETRMTQELGFVTLAAEKI
HHHHHHHHHHCCCCCCEECHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
TEEELQRLETTIYNMSNNIGNYDEMDKEFHTIITSSVMNNVTSGIIEPLMDFFYKMYYTI
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKEHRNIDITIQQHQAIFDALKDRDPFEAHRAMYIHLDHVRKRVKLGKTNNEEN
HHCCCCEEEEEHHHHHHHHHHHCCCCHHHHHHHHEEHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704254; 9384377 [H]