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The map label for this gene is yhdW [H]

Identifier: 23100288

GI number: 23100288

Start: 2914114

End: 2914965

Strand: Reverse

Name: yhdW [H]

Synonym: OB2833

Alternate gene names: 23100288

Gene position: 2914965-2914114 (Counterclockwise)

Preceding gene: 23100289

Following gene: 23100281

Centisome position: 80.29

GC content: 37.21

Gene sequence:

>852_bases
ATGTCTAGTAAACTTATTTTTACATTATTAGTAGCATTAATATTTTTGTCGGTGTTTACTTCACCAGCTTTTGCATCTAA
TGCAGAAACAAAAGGGAATCCACATCATAAAAAAGTGGTAAATGTTGCACACAGAGGCGCATCTGGTCATGCTCCAGAAA
ATACGATTGCAGCATTTGATAAAGCATTTCAAATGAAGTCGGATTTTATTGAAATTGATGTACAAATGACCGCTGATGGT
AAGTTAATCGCTATCCATGATACGACAGTAAACAGAACGACAGATGGTACTGGAAGTGTTAGTGATTACACATTAGAAGA
GATCCAACAACTGGATGCTGGAAGTTGGTTTGGAGAAGAATTTGCAGGAGAGCAAATTCCTACATTTGAAGAAATTCTTG
ATAAGTACCGTGGAAAGATTGGTATTTTAATAGAATTAAAGTCCCCTGAACTATATCCAGGTATGGAGCAAAAAGTTGCC
GAAGCATTAAAAGAACGTAATATGGATAAACCTAGAAACGGAAAAATTATTGTTCAGTCGTTCAACCATGAATCCGTACA
ATTATCAAAAGAACTCCTTCCTAGAATTCCACACGGTGTGTTGGCAGGAATGTCATGGGCAGACGTAACGGGTGAAGAAC
TGGAGGAGTTTGCAACATATGCCGATTACTTTAACCCGAATATGAATATCGCCAACGAAGATTTAATTGATCGTGTACAT
GGTAAAGATATGAAAATGTGGCCTTATACAGTAAGAACACAAGAACAGGCAGATCGTTTACTTGACTTAAAAGTAGATGG
GATCATTACAGATTTCCCTGAATATGTACATAGACACCCGGGGAAGAATTAA

Upstream 100 bases:

>100_bases
AATTATGGAAAATCCTTACAATTATTTATCATGCAATTCACGTTCCCTTAATAGTTATTCAATATAATGAAAATTAAATA
AAGGAAAAGGGAGCGATTGA

Downstream 100 bases:

>100_bases
GAGAATAAAGTAGTAGGGATAATTCATTTAAGAGGAGCTAGCATGTTGCTAGTTCCTCTTAAATTTTGGGGATAATCAGT
ATAGACTGAAGAGAACGGTT

Product: glycerophosphodiester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MSSKLIFTLLVALIFLSVFTSPAFASNAETKGNPHHKKVVNVAHRGASGHAPENTIAAFDKAFQMKSDFIEIDVQMTADG
KLIAIHDTTVNRTTDGTGSVSDYTLEEIQQLDAGSWFGEEFAGEQIPTFEEILDKYRGKIGILIELKSPELYPGMEQKVA
EALKERNMDKPRNGKIIVQSFNHESVQLSKELLPRIPHGVLAGMSWADVTGEELEEFATYADYFNPNMNIANEDLIDRVH
GKDMKMWPYTVRTQEQADRLLDLKVDGIITDFPEYVHRHPGKN

Sequences:

>Translated_283_residues
MSSKLIFTLLVALIFLSVFTSPAFASNAETKGNPHHKKVVNVAHRGASGHAPENTIAAFDKAFQMKSDFIEIDVQMTADG
KLIAIHDTTVNRTTDGTGSVSDYTLEEIQQLDAGSWFGEEFAGEQIPTFEEILDKYRGKIGILIELKSPELYPGMEQKVA
EALKERNMDKPRNGKIIVQSFNHESVQLSKELLPRIPHGVLAGMSWADVTGEELEEFATYADYFNPNMNIANEDLIDRVH
GKDMKMWPYTVRTQEQADRLLDLKVDGIITDFPEYVHRHPGKN
>Mature_282_residues
SSKLIFTLLVALIFLSVFTSPAFASNAETKGNPHHKKVVNVAHRGASGHAPENTIAAFDKAFQMKSDFIEIDVQMTADGK
LIAIHDTTVNRTTDGTGSVSDYTLEEIQQLDAGSWFGEEFAGEQIPTFEEILDKYRGKIGILIELKSPELYPGMEQKVAE
ALKERNMDKPRNGKIIVQSFNHESVQLSKELLPRIPHGVLAGMSWADVTGEELEEFATYADYFNPNMNIANEDLIDRVHG
KDMKMWPYTVRTQEQADRLLDLKVDGIITDFPEYVHRHPGKN

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=194, Percent_Identity=31.4432989690722, Blast_Score=92, Evalue=5e-19,
Organism=Escherichia coli, GI1789858, Length=235, Percent_Identity=28.0851063829787, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1788572, Length=357, Percent_Identity=24.0896358543417, Blast_Score=75, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17561436, Length=221, Percent_Identity=27.1493212669683, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17542344, Length=101, Percent_Identity=34.6534653465347, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 31752; Mature: 31621

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSKLIFTLLVALIFLSVFTSPAFASNAETKGNPHHKKVVNVAHRGASGHAPENTIAAFD
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHH
KAFQMKSDFIEIDVQMTADGKLIAIHDTTVNRTTDGTGSVSDYTLEEIQQLDAGSWFGEE
HHHHHCCCEEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHH
FAGEQIPTFEEILDKYRGKIGILIELKSPELYPGMEQKVAEALKERNMDKPRNGKIIVQS
HCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEE
FNHESVQLSKELLPRIPHGVLAGMSWADVTGEELEEFATYADYFNPNMNIANEDLIDRVH
CCCCHHHHHHHHHHHCCHHHHHCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHC
GKDMKMWPYTVRTQEQADRLLDLKVDGIITDFPEYVHRHPGKN
CCCCEECCEEECCHHHHHHHHHEEECCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SSKLIFTLLVALIFLSVFTSPAFASNAETKGNPHHKKVVNVAHRGASGHAPENTIAAFD
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHH
KAFQMKSDFIEIDVQMTADGKLIAIHDTTVNRTTDGTGSVSDYTLEEIQQLDAGSWFGEE
HHHHHCCCEEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHH
FAGEQIPTFEEILDKYRGKIGILIELKSPELYPGMEQKVAEALKERNMDKPRNGKIIVQS
HCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEE
FNHESVQLSKELLPRIPHGVLAGMSWADVTGEELEEFATYADYFNPNMNIANEDLIDRVH
CCCCHHHHHHHHHHHCCHHHHHCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHC
GKDMKMWPYTVRTQEQADRLLDLKVDGIITDFPEYVHRHPGKN
CCCCEECCEEECCHHHHHHHHHEEECCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]