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The map label for this gene is deoC2

Identifier: 23100206

GI number: 23100206

Start: 2822281

End: 2822952

Strand: Reverse

Name: deoC2

Synonym: OB2751

Alternate gene names: 23100206

Gene position: 2822952-2822281 (Counterclockwise)

Preceding gene: 23100207

Following gene: 23100205

Centisome position: 77.76

GC content: 36.16

Gene sequence:

>672_bases
ATGGAAAAAAGAGAATTAGTAAATATCATTGATTATACGTTATTACATCCAACAGCAAATAAAGCTGACATAGAGAGCTT
TTTGCAAGAAGTAGTCAATTATGGGTTTAAAACCATTTTTGTTCAACCATACTTTGTACCATTTGCAGTTAACTGGTTAG
CTGATCATGATGTGAATGTTGGTGTTCCAGTTGGATTTTCTTTAGGTGGAGCAACTACGCATGTGAAAGTGGAAGAAACT
AAAGAAGCGATTCGTAATGGGGCAAAAGAAATCGATATGCTTGTTAATTTAGGAGCTTTAAAATCAGGGGATTATCAAAT
GGTAGAAACTGATATTGCAAAGGTAGTAGAGGCGGCAAACGGTTTAAATACTAAAGTAATTATTGAAACAGCTCTATTGA
ACCAAGAAGAGAAGATAAGTGTCACGGAATGTATTATCCGTGCTGGAGCAGATTTTGTAAAAACAGCTACTGGATTTAAT
GGTGGTGGAGCAACGGTAGAAGATGTTCGATTATTAAATGAAATCGGTAAAGGGAAAATACAAGTTAAGGCAGCCGGAGG
GATAAAGACATATGAAGATGCCTTAGCAATTATTGATGCAGGAGCAACACGAATTGGTTCTAGCGGAGCTATACAAATAA
TTCGAGGTGAAACATCAACAAGCTCTTATTAA

Upstream 100 bases:

>100_bases
GATCAGTGGGATGAAGCATACCAAGCGATAAAAGACGGAGAGGCAATAAAAGTACTATTAAAACCATTACAAGATTAACT
TCATGAGGAGGCTTACCATT

Downstream 100 bases:

>100_bases
TGTGATTGGAAAAGAAAGCTTGCTTGAACAAAACTATTGAAATGAGGGATTTACATGGTTGATGCATTACTAGACTTTAT
GCTTGGTCCAATGCGAGGTA

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase 2; DERA 2; Deoxyriboaldolase 2

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MEKRELVNIIDYTLLHPTANKADIESFLQEVVNYGFKTIFVQPYFVPFAVNWLADHDVNVGVPVGFSLGGATTHVKVEET
KEAIRNGAKEIDMLVNLGALKSGDYQMVETDIAKVVEAANGLNTKVIIETALLNQEEKISVTECIIRAGADFVKTATGFN
GGGATVEDVRLLNEIGKGKIQVKAAGGIKTYEDALAIIDAGATRIGSSGAIQIIRGETSTSSY

Sequences:

>Translated_223_residues
MEKRELVNIIDYTLLHPTANKADIESFLQEVVNYGFKTIFVQPYFVPFAVNWLADHDVNVGVPVGFSLGGATTHVKVEET
KEAIRNGAKEIDMLVNLGALKSGDYQMVETDIAKVVEAANGLNTKVIIETALLNQEEKISVTECIIRAGADFVKTATGFN
GGGATVEDVRLLNEIGKGKIQVKAAGGIKTYEDALAIIDAGATRIGSSGAIQIIRGETSTSSY
>Mature_223_residues
MEKRELVNIIDYTLLHPTANKADIESFLQEVVNYGFKTIFVQPYFVPFAVNWLADHDVNVGVPVGFSLGGATTHVKVEET
KEAIRNGAKEIDMLVNLGALKSGDYQMVETDIAKVVEAANGLNTKVIIETALLNQEEKISVTECIIRAGADFVKTATGFN
GGGATVEDVRLLNEIGKGKIQVKAAGGIKTYEDALAIIDAGATRIGSSGAIQIIRGETSTSSY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily

Homologues:

Organism=Escherichia coli, GI1790841, Length=175, Percent_Identity=34.2857142857143, Blast_Score=71, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOC2_OCEIH (Q8EMT9)

Other databases:

- EMBL:   BA000028
- RefSeq:   NP_693673.1
- ProteinModelPortal:   Q8EMT9
- SMR:   Q8EMT9
- GeneID:   1016999
- GenomeReviews:   BA000028_GR
- KEGG:   oih:OB2751
- NMPDR:   fig|221109.1.peg.2751
- HOGENOM:   HBG636421
- OMA:   ANEAIEN
- BioCyc:   OIHE221109:OB2751-MONOMER
- BRENDA:   4.1.2.4
- GO:   GO:0005737
- HAMAP:   MF_00114
- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10889
- PIRSF:   PIRSF001357
- TIGRFAMs:   TIGR00126

Pfam domain/function: PF01791 DeoC

EC number: =4.1.2.4

Molecular weight: Translated: 23892; Mature: 23892

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: ACT_SITE 154-154 ACT_SITE 183-183

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKRELVNIIDYTLLHPTANKADIESFLQEVVNYGFKTIFVQPYFVPFAVNWLADHDVNV
CCHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEHHCCCCCC
GVPVGFSLGGATTHVKVEETKEAIRNGAKEIDMLVNLGALKSGDYQMVETDIAKVVEAAN
CCCCCEECCCCEEEEEHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC
GLNTKVIIETALLNQEEKISVTECIIRAGADFVKTATGFNGGGATVEDVRLLNEIGKGKI
CCCEEEEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCCEE
QVKAAGGIKTYEDALAIIDAGATRIGSSGAIQIIRGETSTSSY
EEEECCCCCHHHHHHHHHCCCCHHCCCCCCEEEEECCCCCCCC
>Mature Secondary Structure
MEKRELVNIIDYTLLHPTANKADIESFLQEVVNYGFKTIFVQPYFVPFAVNWLADHDVNV
CCHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEHHCCCCCC
GVPVGFSLGGATTHVKVEETKEAIRNGAKEIDMLVNLGALKSGDYQMVETDIAKVVEAAN
CCCCCEECCCCEEEEEHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC
GLNTKVIIETALLNQEEKISVTECIIRAGADFVKTATGFNGGGATVEDVRLLNEIGKGKI
CCCEEEEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCCEE
QVKAAGGIKTYEDALAIIDAGATRIGSSGAIQIIRGETSTSSY
EEEECCCCCHHHHHHHHHCCCCHHCCCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376