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The map label for this gene is ykfC [H]

Identifier: 23100170

GI number: 23100170

Start: 2785597

End: 2786856

Strand: Reverse

Name: ykfC [H]

Synonym: OB2715

Alternate gene names: 23100170

Gene position: 2786856-2785597 (Counterclockwise)

Preceding gene: 23100172

Following gene: 23100165

Centisome position: 76.76

GC content: 42.46

Gene sequence:

>1260_bases
ATGTTGATGAACCAAATTCTGTCACGGGACAATCTCATTCTCGCACTAAAGCGAGTCGAACGAAATAAAGGAAGTCATGG
CATAGATGAAATGTCCGTAAAATTCCTACGAAGACATCTCTATGATAACTGGGATTCCCTTCGGGAGAACTTGAGGAAAG
GAACCTATACACCTTCTCCTGTCCGCCGTGTCGAAATCCCGAAACCAAGCGGAGGAGTTCGGATGTTAGGTATTCCAACC
GTGACGGATCGTTTCATTCAACAGGCTATTGCCCAAGTACTTCATACAATTTTTGACCCCTCCTTCTCAGAACATAGCTA
TGGATTCAGGCCCAACCGTCGAGGACATGACGCTGTGAGGAAGGCAAGGGGGTTTATTAAAGAAGGATACAGATGGGTAA
TTGATATGGACCTAGAGAAATTCTTTGATAAGGTGAACCATGATAAGCTCATGGGTGTTTTAGCGAAGCGCATCAAGGAT
AAGGAACTGCTTCGGCTTATTCGGAAATACCTACAATCTGGCGTCATGATAAATGGGATAGTAGTTAGCTCCGAAGAAGG
CACTCCGCAAGGCGGGCCGTTGAGCCCTCTTCTTTCTAACATTATATTAGATGATTTAGATAAGGAACTGGAGGAGCGTG
GGCTACGTTTCGTTCGTTATGCGGATGACTGCAACATCTATGTGAGAACAAAGAAAGCTGGGAATCGTGTAATGAATTCC
ATTACTACATTTATCGAAGAGAAACTTCGCTTGAAAGTAAATAAAGAGAAATCAGCAGTGGACCGGCCTTGGAAACGTAA
GTTTCTTGGTTTTAGTTTCACCAATGGAAAGAATCCAAAAATTAGAATCGCAAAAGAAAGTATTATGCGTCTAAAACAGA
AAATCAGGGAAATAACTTCACGTTCCAAGCCATTTCCTATGGAAGTAAGAATTGAGAAATTAAACAAATACCTGATGGGT
TGGTGCGGGTATTACGCTTTAGCGGAGACACCTTCAAAGTTTGAGGAGTTCGATAAGTGGATAAGAAGAAGATTGCGCAT
GTGTATGTGGAAACAATGGAAGCTTCCACGGACGAAAGTCCGAAAGCTGATTAGCTTGGGTGTTCCTGACCACAAAGCAT
ACGAATGGGGAAACACCAGAAAGAATTATTGGCGTATCTCCAAGAGTCCAATCTTAAGCAGAACCCTAGGCAACTCCTAT
TGGAGTAGACTAGGGCTCAAAAGTCTGTATCAAAGGTATGAATTTATTCGTAATACTTAA

Upstream 100 bases:

>100_bases
ATCCAAAGGAGGACGTAGTGAATCTACAGGGGACTTTGGAAGGGTGGAGTGGAACTTGCACAAATAGAACGTCACATTCA
CGAAGAAAGGAAACCCAAGT

Downstream 100 bases:

>100_bases
TTGAACCGCCGTATACCGAACGGTACGTACGGTGGTGTGAGAGGACGGGGGTTAGTCGCCCCCTTCTACTCTATTCTTAA
TATTAAATTCCTGCGTTTTC

Product: recombinase for Bh.Int

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MLMNQILSRDNLILALKRVERNKGSHGIDEMSVKFLRRHLYDNWDSLRENLRKGTYTPSPVRRVEIPKPSGGVRMLGIPT
VTDRFIQQAIAQVLHTIFDPSFSEHSYGFRPNRRGHDAVRKARGFIKEGYRWVIDMDLEKFFDKVNHDKLMGVLAKRIKD
KELLRLIRKYLQSGVMINGIVVSSEEGTPQGGPLSPLLSNIILDDLDKELEERGLRFVRYADDCNIYVRTKKAGNRVMNS
ITTFIEEKLRLKVNKEKSAVDRPWKRKFLGFSFTNGKNPKIRIAKESIMRLKQKIREITSRSKPFPMEVRIEKLNKYLMG
WCGYYALAETPSKFEEFDKWIRRRLRMCMWKQWKLPRTKVRKLISLGVPDHKAYEWGNTRKNYWRISKSPILSRTLGNSY
WSRLGLKSLYQRYEFIRNT

Sequences:

>Translated_419_residues
MLMNQILSRDNLILALKRVERNKGSHGIDEMSVKFLRRHLYDNWDSLRENLRKGTYTPSPVRRVEIPKPSGGVRMLGIPT
VTDRFIQQAIAQVLHTIFDPSFSEHSYGFRPNRRGHDAVRKARGFIKEGYRWVIDMDLEKFFDKVNHDKLMGVLAKRIKD
KELLRLIRKYLQSGVMINGIVVSSEEGTPQGGPLSPLLSNIILDDLDKELEERGLRFVRYADDCNIYVRTKKAGNRVMNS
ITTFIEEKLRLKVNKEKSAVDRPWKRKFLGFSFTNGKNPKIRIAKESIMRLKQKIREITSRSKPFPMEVRIEKLNKYLMG
WCGYYALAETPSKFEEFDKWIRRRLRMCMWKQWKLPRTKVRKLISLGVPDHKAYEWGNTRKNYWRISKSPILSRTLGNSY
WSRLGLKSLYQRYEFIRNT
>Mature_419_residues
MLMNQILSRDNLILALKRVERNKGSHGIDEMSVKFLRRHLYDNWDSLRENLRKGTYTPSPVRRVEIPKPSGGVRMLGIPT
VTDRFIQQAIAQVLHTIFDPSFSEHSYGFRPNRRGHDAVRKARGFIKEGYRWVIDMDLEKFFDKVNHDKLMGVLAKRIKD
KELLRLIRKYLQSGVMINGIVVSSEEGTPQGGPLSPLLSNIILDDLDKELEERGLRFVRYADDCNIYVRTKKAGNRVMNS
ITTFIEEKLRLKVNKEKSAVDRPWKRKFLGFSFTNGKNPKIRIAKESIMRLKQKIREITSRSKPFPMEVRIEKLNKYLMG
WCGYYALAETPSKFEEFDKWIRRRLRMCMWKQWKLPRTKVRKLISLGVPDHKAYEWGNTRKNYWRISKSPILSRTLGNSY
WSRLGLKSLYQRYEFIRNT

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=244, Percent_Identity=33.6065573770492, Blast_Score=130, Evalue=3e-31,
Organism=Saccharomyces cerevisiae, GI6226520, Length=211, Percent_Identity=33.175355450237, Blast_Score=117, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 49481; Mature: 49481

Theoretical pI: Translated: 10.90; Mature: 10.90

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMNQILSRDNLILALKRVERNKGSHGIDEMSVKFLRRHLYDNWDSLRENLRKGTYTPSP
CCHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCC
VRRVEIPKPSGGVRMLGIPTVTDRFIQQAIAQVLHTIFDPSFSEHSYGFRPNRRGHDAVR
CCEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
KARGFIKEGYRWVIDMDLEKFFDKVNHDKLMGVLAKRIKDKELLRLIRKYLQSGVMINGI
HHHHHHHCCCEEEEECCHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEE
VVSSEEGTPQGGPLSPLLSNIILDDLDKELEERGLRFVRYADDCNIYVRTKKAGNRVMNS
EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECHHHHHHHHH
ITTFIEEKLRLKVNKEKSAVDRPWKRKFLGFSFTNGKNPKIRIAKESIMRLKQKIREITS
HHHHHHHHHHHHCCCHHHHHCCCHHHHHCCCEECCCCCCEEEEHHHHHHHHHHHHHHHHH
RSKPFPMEVRIEKLNKYLMGWCGYYALAETPSKFEEFDKWIRRRLRMCMWKQWKLPRTKV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
RKLISLGVPDHKAYEWGNTRKNYWRISKSPILSRTLGNSYWSRLGLKSLYQRYEFIRNT
HHHHHCCCCCCCCCCCCCCCCHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLMNQILSRDNLILALKRVERNKGSHGIDEMSVKFLRRHLYDNWDSLRENLRKGTYTPSP
CCHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCC
VRRVEIPKPSGGVRMLGIPTVTDRFIQQAIAQVLHTIFDPSFSEHSYGFRPNRRGHDAVR
CCEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
KARGFIKEGYRWVIDMDLEKFFDKVNHDKLMGVLAKRIKDKELLRLIRKYLQSGVMINGI
HHHHHHHCCCEEEEECCHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEE
VVSSEEGTPQGGPLSPLLSNIILDDLDKELEERGLRFVRYADDCNIYVRTKKAGNRVMNS
EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECHHHHHHHHH
ITTFIEEKLRLKVNKEKSAVDRPWKRKFLGFSFTNGKNPKIRIAKESIMRLKQKIREITS
HHHHHHHHHHHHCCCHHHHHCCCHHHHHCCCEECCCCCCEEEEHHHHHHHHHHHHHHHHH
RSKPFPMEVRIEKLNKYLMGWCGYYALAETPSKFEEFDKWIRRRLRMCMWKQWKLPRTKV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
RKLISLGVPDHKAYEWGNTRKNYWRISKSPILSRTLGNSYWSRLGLKSLYQRYEFIRNT
HHHHHCCCCCCCCCCCCCCCCHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]