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The map label for this gene is yfmS [H]

Identifier: 23100163

GI number: 23100163

Start: 2777916

End: 2778770

Strand: Reverse

Name: yfmS [H]

Synonym: OB2708

Alternate gene names: 23100163

Gene position: 2778770-2777916 (Counterclockwise)

Preceding gene: 23100164

Following gene: 23100162

Centisome position: 76.54

GC content: 37.19

Gene sequence:

>855_bases
ATGGATGTAGTAAATGTAAAAACCCATCCGTTATTGGAGGCTTTTATTCAGGTTGGGCCTTTTATACAGCAATTAGTAAA
TGATGACATAACGATTGGAATATATGACACGGAGAAGTTATTGAAGAATTTTCCGGGTCAAACATTTTCATTGGATGTTT
CAGCAGGAGACCCGTTATTAGAGGGAGATATCGTAACGAGAGCGATTCAAGAAGGGGAGAACCAGTCTATGGTAGTTCCT
GCTCATGTTCTCGGTGTGAAATTAATTTCAAAGGCAGTTCCTATAAGAGATGAATTTGGCAACATTGTTGGCGGTGTTGG
CTTAGGAATGAACGTGGATAAAGCACAACAACTGTCAGATGTATCTGGGAATTTATCCGATGTTTTTGAAGATATTACTA
AAACGATTACAGATATGGCAGAATCTATCTCTCAATTGTCAGAGAATATGAACTTTGTATCACAAAAGTCAGTTGAAGTT
GGAGAGAGTGTCCAGTTAATTGAAGAATTTTCACAAACGGTAAAAGGAATTGCCGATCAAAGTAACTTGCTCGGTTTAAA
TGCTGCTATCGAAGCGGCTCGAGCAGGAGAACATGGTAGAGGTTTTTCTGTGGTTGCCAGTGAAGTTCGTAAAATGGCTG
CTAATTCTAAAACACAAGTAGATGAAATCTATACGATTACGAATAAAATTAAATCCGTTATTGATGGTCTTGATAAAGAT
ATTCAAAAAGCTAATCTTGAATCAGACTCTCAATCAGCTGCTATTGAAGAACTTACAGCAACAATGCAAGAAGTAAATAG
CAATATTCAAAGCTTAGCTGCCATGGCTAAGGAAAATACAGAAATACGAAATTAG

Upstream 100 bases:

>100_bases
AATTTAGAAAGTTATGGAAATAGATAGTTGTCTTCACAATCCTTTATTCATACCGATATAAAATCTAGAGACTAGGAAAT
TTTTTAGGGGGGAAGGAGAA

Downstream 100 bases:

>100_bases
AGGAGCGAATATCATGTCAATGTATAGTCAATTAGATTCCCAATATATCAATGGTGTTTGGAAAGATGGAAATGGAAAGG
CTACGATTCAAAATACGAAT

Product: methyl-accepting chemotaxis protein

Products: NA

Alternate protein names: Methyl-accepting chemotaxis protein [H]

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MDVVNVKTHPLLEAFIQVGPFIQQLVNDDITIGIYDTEKLLKNFPGQTFSLDVSAGDPLLEGDIVTRAIQEGENQSMVVP
AHVLGVKLISKAVPIRDEFGNIVGGVGLGMNVDKAQQLSDVSGNLSDVFEDITKTITDMAESISQLSENMNFVSQKSVEV
GESVQLIEEFSQTVKGIADQSNLLGLNAAIEAARAGEHGRGFSVVASEVRKMAANSKTQVDEIYTITNKIKSVIDGLDKD
IQKANLESDSQSAAIEELTATMQEVNSNIQSLAAMAKENTEIRN

Sequences:

>Translated_284_residues
MDVVNVKTHPLLEAFIQVGPFIQQLVNDDITIGIYDTEKLLKNFPGQTFSLDVSAGDPLLEGDIVTRAIQEGENQSMVVP
AHVLGVKLISKAVPIRDEFGNIVGGVGLGMNVDKAQQLSDVSGNLSDVFEDITKTITDMAESISQLSENMNFVSQKSVEV
GESVQLIEEFSQTVKGIADQSNLLGLNAAIEAARAGEHGRGFSVVASEVRKMAANSKTQVDEIYTITNKIKSVIDGLDKD
IQKANLESDSQSAAIEELTATMQEVNSNIQSLAAMAKENTEIRN
>Mature_284_residues
MDVVNVKTHPLLEAFIQVGPFIQQLVNDDITIGIYDTEKLLKNFPGQTFSLDVSAGDPLLEGDIVTRAIQEGENQSMVVP
AHVLGVKLISKAVPIRDEFGNIVGGVGLGMNVDKAQQLSDVSGNLSDVFEDITKTITDMAESISQLSENMNFVSQKSVEV
GESVQLIEEFSQTVKGIADQSNLLGLNAAIEAARAGEHGRGFSVVASEVRKMAANSKTQVDEIYTITNKIKSVIDGLDKD
IQKANLESDSQSAAIEELTATMQEVNSNIQSLAAMAKENTEIRN

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: COG0840

COG function: function code NT; Methyl-accepting chemotaxis protein

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1788194, Length=116, Percent_Identity=37.9310344827586, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787690, Length=150, Percent_Identity=32.6666666666667, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788195, Length=125, Percent_Identity=35.2, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789453, Length=118, Percent_Identity=34.7457627118644, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI2367378, Length=74, Percent_Identity=48.6486486486487, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004089 [H]

Pfam domain/function: PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 30581; Mature: 30581

Theoretical pI: Translated: 4.19; Mature: 4.19

Prosite motif: PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVVNVKTHPLLEAFIQVGPFIQQLVNDDITIGIYDTEKLLKNFPGQTFSLDVSAGDPLL
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHCCCCEEEEECCCCCCCH
EGDIVTRAIQEGENQSMVVPAHVLGVKLISKAVPIRDEFGNIVGGVGLGMNVDKAQQLSD
HHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHH
VSGNLSDVFEDITKTITDMAESISQLSENMNFVSQKSVEVGESVQLIEEFSQTVKGIADQ
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SNLLGLNAAIEAARAGEHGRGFSVVASEVRKMAANSKTQVDEIYTITNKIKSVIDGLDKD
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
IQKANLESDSQSAAIEELTATMQEVNSNIQSLAAMAKENTEIRN
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDVVNVKTHPLLEAFIQVGPFIQQLVNDDITIGIYDTEKLLKNFPGQTFSLDVSAGDPLL
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHCCCCEEEEECCCCCCCH
EGDIVTRAIQEGENQSMVVPAHVLGVKLISKAVPIRDEFGNIVGGVGLGMNVDKAQQLSD
HHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHH
VSGNLSDVFEDITKTITDMAESISQLSENMNFVSQKSVEVGESVQLIEEFSQTVKGIADQ
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SNLLGLNAAIEAARAGEHGRGFSVVASEVRKMAANSKTQVDEIYTITNKIKSVIDGLDKD
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
IQKANLESDSQSAAIEELTATMQEVNSNIQSLAAMAKENTEIRN
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]