Click here to switch to the map view.

The map label for this gene is 23100140

Identifier: 23100140

GI number: 23100140

Start: 2756123

End: 2756299

Strand: Reverse

Name: 23100140

Synonym: OB2685

Alternate gene names: NA

Gene position: 2756299-2756123 (Counterclockwise)

Preceding gene: 23100141

Following gene: 23100136

Centisome position: 75.92

GC content: 41.24

Gene sequence:

>177_bases
ATGAGTGATGGTATGAAAGATAAAGCGAAAGCAATTGGAAAAAAAATTAAAGGTGAAGCAAAAGATCAATGGGGTAGCGC
AACGGATGATCCTCAACGAAAAGCAGAAGGAAAGCGTGATAAAGCGAAGGGCGAAGCTCAAGACACGATTGCCGATGCGA
AGAATAACAATAAGTGA

Upstream 100 bases:

>100_bases
GTTTTTAACTATGATTTCTTCAAACAAGAACTTCAATCATGTTTAGTCAATATCATTAAGGGAAAACACATACTAACAAA
CATGATAGGAGGTTTTCATC

Downstream 100 bases:

>100_bases
TTTAAGTGATCAAGCTAGGGGGACGATAAATGATTGGCCCTCTAGCTTAATTATATAGCAAATGATTGATGCTGTAGCTT
TTTAAAATAATTGAACCAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 58; Mature: 57

Protein sequence:

>58_residues
MSDGMKDKAKAIGKKIKGEAKDQWGSATDDPQRKAEGKRDKAKGEAQDTIADAKNNNK

Sequences:

>Translated_58_residues
MSDGMKDKAKAIGKKIKGEAKDQWGSATDDPQRKAEGKRDKAKGEAQDTIADAKNNNK
>Mature_57_residues
SDGMKDKAKAIGKKIKGEAKDQWGSATDDPQRKAEGKRDKAKGEAQDTIADAKNNNK

Specific function: Unknown

COG id: COG3237

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0337 (CsbD) family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2685_OCEIH (Q8EN05)

Other databases:

- EMBL:   BA000028
- RefSeq:   NP_693606.1
- ProteinModelPortal:   Q8EN05
- SMR:   Q8EN05
- GeneID:   1017045
- GenomeReviews:   BA000028_GR
- KEGG:   oih:OB2685
- NMPDR:   fig|221109.1.peg.2685
- BioCyc:   OIHE221109:OB2685-MONOMER
- InterPro:   IPR008462
- Gene3D:   G3DSA:1.10.1470.10

Pfam domain/function: PF05532 CsbD; SSF69047 CsbD

EC number: NA

Molecular weight: Translated: 6275; Mature: 6144

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDGMKDKAKAIGKKIKGEAKDQWGSATDDPQRKAEGKRDKAKGEAQDTIADAKNNNK
CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCC
>Mature Secondary Structure 
SDGMKDKAKAIGKKIKGEAKDQWGSATDDPQRKAEGKRDKAKGEAQDTIADAKNNNK
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376