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The map label for this gene is lytR

Identifier: 23099985

GI number: 23099985

Start: 2584623

End: 2585585

Strand: Direct

Name: lytR

Synonym: OB2530

Alternate gene names: 23099985

Gene position: 2584623-2585585 (Clockwise)

Preceding gene: 23099976

Following gene: 23099986

Centisome position: 71.19

GC content: 36.97

Gene sequence:

>963_bases
GTGGTTTCTAGAACTGAGCGCAAGCAACATAAAAAACGTAGAAAATGGCCATTCTGGCTTGGGGGAATTTTATTAGTTCT
TCTGTTATTAATTAGTGGCGGAATCTTTCTAATATATAATCAAGTCGGTGCAGTGGTCGACACAATGCATAGTCCATTAA
GTCGAGACAGTGATCCTGATAGACAAAAAGAAATTAATCAATTATATAAAGAAAAAGACGCAGTGAATATCCTGTTATTA
GGTGTAGATGAAAGAGATGGAGATTTAGGCAGATCAGACACAATGATACTACTCTCCATTAATCCGAATACCGATAAAAT
GATAATGTTAAGTATACCGCGCGATACTTATGTGAACATTCCAGGAAGAGGAATGGATAAAATCAATCATGCATACCCGT
TCGGTATTGTAGATGGTGTCGGTGGGCCTGACTTATCTGTTCAAACAGTTGAAGAAACTTTTAATCTATCGATTCATTCC
TATATCCGTGTTAATATGGAAGGTTTTCAACAGGGAATTGATGCTGTTGGCGGTGTAACTGTTAATAATGCTCAAGCATT
CAGTACCGGCGGTTATAACTTTGATCAAGGGCAAATTACACTTGACGGTAAACAGGCATTAGAATTTATCCGTATGAGAA
AGCAGGATAGTCGTGGAGATTTAGGTAGGAATGATCGTCAACGTCAAGTAATACAAGCTGCTATGAATGAAGCTGCCAGC
TTCTCCAGTATTACCAAAGCAGGAGAGATCTTAGATATATTGGGAAACAATGTACAAACAGATTTGGATATGGATAAATT
ACAAACGCTATTAACCAATTATGCAGGAGCACGTAATAATATTACTACAATGGAAATAGAAGGACATGGTGAAACTATAA
ACGGTATCTGGTATTATATCGTCAGTGATGAAGAGATTAATCGAGTTAATTCTGAAATCACTGGACATATGCAAGAACAA
TAA

Upstream 100 bases:

>100_bases
TCCGATATAATTTATGCAAGATTTGATATTTTTTTAGGTTTAACATCATACAAAAGTCTCAAATTGTCGAAATATACGAT
AAAGATAGCGGGGAATAAAA

Downstream 100 bases:

>100_bases
CATAAAAGGTCACCTGTTTTAGCGAGCAGTGTGACTTTTTCTTTTATGCTCATCAGAGGGAGTTTGATACATCTATTGAC
GTAGAAAAAATGCTATACTT

Product: attenuator for lytABC and lytR expression

Products: NA

Alternate protein names: Membrane-bound protein lytR

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MVSRTERKQHKKRRKWPFWLGGILLVLLLLISGGIFLIYNQVGAVVDTMHSPLSRDSDPDRQKEINQLYKEKDAVNILLL
GVDERDGDLGRSDTMILLSINPNTDKMIMLSIPRDTYVNIPGRGMDKINHAYPFGIVDGVGGPDLSVQTVEETFNLSIHS
YIRVNMEGFQQGIDAVGGVTVNNAQAFSTGGYNFDQGQITLDGKQALEFIRMRKQDSRGDLGRNDRQRQVIQAAMNEAAS
FSSITKAGEILDILGNNVQTDLDMDKLQTLLTNYAGARNNITTMEIEGHGETINGIWYYIVSDEEINRVNSEITGHMQEQ

Sequences:

>Translated_320_residues
MVSRTERKQHKKRRKWPFWLGGILLVLLLLISGGIFLIYNQVGAVVDTMHSPLSRDSDPDRQKEINQLYKEKDAVNILLL
GVDERDGDLGRSDTMILLSINPNTDKMIMLSIPRDTYVNIPGRGMDKINHAYPFGIVDGVGGPDLSVQTVEETFNLSIHS
YIRVNMEGFQQGIDAVGGVTVNNAQAFSTGGYNFDQGQITLDGKQALEFIRMRKQDSRGDLGRNDRQRQVIQAAMNEAAS
FSSITKAGEILDILGNNVQTDLDMDKLQTLLTNYAGARNNITTMEIEGHGETINGIWYYIVSDEEINRVNSEITGHMQEQ
>Mature_320_residues
MVSRTERKQHKKRRKWPFWLGGILLVLLLLISGGIFLIYNQVGAVVDTMHSPLSRDSDPDRQKEINQLYKEKDAVNILLL
GVDERDGDLGRSDTMILLSINPNTDKMIMLSIPRDTYVNIPGRGMDKINHAYPFGIVDGVGGPDLSVQTVEETFNLSIHS
YIRVNMEGFQQGIDAVGGVTVNNAQAFSTGGYNFDQGQITLDGKQALEFIRMRKQDSRGDLGRNDRQRQVIQAAMNEAAS
FSSITKAGEILDILGNNVQTDLDMDKLQTLLTNYAGARNNITTMEIEGHGETINGIWYYIVSDEEINRVNSEITGHMQEQ

Specific function: Attenuator role for operon expression

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LYAT_OCEIH (Q8ENF3)

Other databases:

- EMBL:   BA000028
- RefSeq:   NP_693451.1
- GeneID:   1017154
- GenomeReviews:   BA000028_GR
- KEGG:   oih:OB2530
- NMPDR:   fig|221109.1.peg.2529
- HOGENOM:   HBG304505
- OMA:   TQDQTTT
- BioCyc:   OIHE221109:OB2530-MONOMER
- GO:   GO:0006350
- HAMAP:   MF_01140
- InterPro:   IPR004474
- TIGRFAMs:   TIGR00350

Pfam domain/function: PF03816 LytR_cpsA_psr

EC number: NA

Molecular weight: Translated: 35779; Mature: 35779

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x105973c4)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSRTERKQHKKRRKWPFWLGGILLVLLLLISGGIFLIYNQVGAVVDTMHSPLSRDSDPD
CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCCCCCCH
RQKEINQLYKEKDAVNILLLGVDERDGDLGRSDTMILLSINPNTDKMIMLSIPRDTYVNI
HHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCEEEC
PGRGMDKINHAYPFGIVDGVGGPDLSVQTVEETFNLSIHSYIRVNMEGFQQGIDAVGGVT
CCCCHHHHCCCCCCCEECCCCCCCCCCEEHHHHHCCEEEEEEEEEHHHHHHHHHHHCCEE
VNNAQAFSTGGYNFDQGQITLDGKQALEFIRMRKQDSRGDLGRNDRQRQVIQAAMNEAAS
ECCCEEEECCCCCCCCCEEEECHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
FSSITKAGEILDILGNNVQTDLDMDKLQTLLTNYAGARNNITTMEIEGHGETINGIWYYI
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCEECEEEEEE
VSDEEINRVNSEITGHMQEQ
ECCHHHHHHHHHHCCCCCCH
>Mature Secondary Structure
MVSRTERKQHKKRRKWPFWLGGILLVLLLLISGGIFLIYNQVGAVVDTMHSPLSRDSDPD
CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCCCCCCH
RQKEINQLYKEKDAVNILLLGVDERDGDLGRSDTMILLSINPNTDKMIMLSIPRDTYVNI
HHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCEEEC
PGRGMDKINHAYPFGIVDGVGGPDLSVQTVEETFNLSIHSYIRVNMEGFQQGIDAVGGVT
CCCCHHHHCCCCCCCEECCCCCCCCCCEEHHHHHCCEEEEEEEEEHHHHHHHHHHHCCEE
VNNAQAFSTGGYNFDQGQITLDGKQALEFIRMRKQDSRGDLGRNDRQRQVIQAAMNEAAS
ECCCEEEECCCCCCCCCEEEECHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
FSSITKAGEILDILGNNVQTDLDMDKLQTLLTNYAGARNNITTMEIEGHGETINGIWYYI
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCEECEEEEEE
VSDEEINRVNSEITGHMQEQ
ECCHHHHHHHHHHCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376