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The map label for this gene is smpB

Identifier: 23099881

GI number: 23099881

Start: 2479511

End: 2479978

Strand: Reverse

Name: smpB

Synonym: OB2426

Alternate gene names: 23099881

Gene position: 2479978-2479511 (Counterclockwise)

Preceding gene: 23099882

Following gene: 23099880

Centisome position: 68.31

GC content: 33.76

Gene sequence:

>468_bases
ATGCCAAAAGGAAATGGAAAAGTAATTGCACAAAATAAAAAAGCTTCCCATGATTATTTCATAGAGGATACGTACGAAGC
TGGTATCGTTCTTCATGGAACTGAGATCAAATCAATTCGTAATGGTAGGGTAAACATTAAAGATTCCCATGCGCGTATAG
ATCGAAAAGGTGAAGTGCAATTAATTAATTTACACATAGCAGAATACGAGCAGGGAAATCGTTATAATCATGATCCAACG
CGATCTCGTAAATTATTACTACATCGTAAGGAAATCGATAAATTAATTGGTTTAACCCAACAACAAGGATATGCTTTAGT
GCCGTTAAAGATTTATTTAAAAAATGGATTTGCCAAAGTATTAATCGGTCTTGGAAAAGGGAAGAAGAAATATGATAAGC
GAGAAGATTTAAAACAGAAGCAAATGAAAAGAGATGTAGATCGTGCCATTAAAGATCATATGCGTTAA

Upstream 100 bases:

>100_bases
GTGCTTCGATATAGAGAGTTTTTCTTCATCTCATAACATCTGTGTCGAACTCACATCCTTTTTATTTGATTTTGAACACA
TATTAGTAGGAGGAACGGTT

Downstream 100 bases:

>100_bases
GATGTTGTTAAATGTTGCCAGCACTTGATTTTTAGCGTGGCTTTGTTATAATAAGTTATAGAATTAAATAACAGAAATGA
GCTCATTCCCGAGCGTTTCT

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MPKGNGKVIAQNKKASHDYFIEDTYEAGIVLHGTEIKSIRNGRVNIKDSHARIDRKGEVQLINLHIAEYEQGNRYNHDPT
RSRKLLLHRKEIDKLIGLTQQQGYALVPLKIYLKNGFAKVLIGLGKGKKKYDKREDLKQKQMKRDVDRAIKDHMR

Sequences:

>Translated_155_residues
MPKGNGKVIAQNKKASHDYFIEDTYEAGIVLHGTEIKSIRNGRVNIKDSHARIDRKGEVQLINLHIAEYEQGNRYNHDPT
RSRKLLLHRKEIDKLIGLTQQQGYALVPLKIYLKNGFAKVLIGLGKGKKKYDKREDLKQKQMKRDVDRAIKDHMR
>Mature_154_residues
PKGNGKVIAQNKKASHDYFIEDTYEAGIVLHGTEIKSIRNGRVNIKDSHARIDRKGEVQLINLHIAEYEQGNRYNHDPTR
SRKLLLHRKEIDKLIGLTQQQGYALVPLKIYLKNGFAKVLIGLGKGKKKYDKREDLKQKQMKRDVDRAIKDHMR

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=154, Percent_Identity=43.5064935064935, Blast_Score=132, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_OCEIH (Q8ENQ2)

Other databases:

- EMBL:   BA000028
- RefSeq:   NP_693347.1
- ProteinModelPortal:   Q8ENQ2
- SMR:   Q8ENQ2
- GeneID:   1015475
- GenomeReviews:   BA000028_GR
- KEGG:   oih:OB2426
- NMPDR:   fig|221109.1.peg.2423
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- BioCyc:   OIHE221109:OB2426-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 17956; Mature: 17825

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKGNGKVIAQNKKASHDYFIEDTYEAGIVLHGTEIKSIRNGRVNIKDSHARIDRKGEVQ
CCCCCCCEEEECCCCCCCEEEEECCCCCEEEECCHHHHHCCCCCEEECCHHCCCCCCCEE
LINLHIAEYEQGNRYNHDPTRSRKLLLHRKEIDKLIGLTQQQGYALVPLKIYLKNGFAKV
EEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCHHHE
LIGLGKGKKKYDKREDLKQKQMKRDVDRAIKDHMR
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PKGNGKVIAQNKKASHDYFIEDTYEAGIVLHGTEIKSIRNGRVNIKDSHARIDRKGEVQ
CCCCCCEEEECCCCCCCEEEEECCCCCEEEECCHHHHHCCCCCEEECCHHCCCCCCCEE
LINLHIAEYEQGNRYNHDPTRSRKLLLHRKEIDKLIGLTQQQGYALVPLKIYLKNGFAKV
EEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCHHHE
LIGLGKGKKKYDKREDLKQKQMKRDVDRAIKDHMR
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376