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The map label for this gene is sodC2 [H]

Identifier: 23099794

GI number: 23099794

Start: 2396079

End: 2396666

Strand: Reverse

Name: sodC2 [H]

Synonym: OB2339

Alternate gene names: 23099794

Gene position: 2396666-2396079 (Counterclockwise)

Preceding gene: 23099795

Following gene: 23099792

Centisome position: 66.01

GC content: 39.12

Gene sequence:

>588_bases
ATGCGTCCTCTAATATTAGGATTAATAATGAGCCTTACATTGTTATTATCTGCGTGTTTGCTTCATAATCCGAAATCACT
AACAATAGAAATGTATAATGTAGATGGTGATCGAGTAGGGACAGCCTTATTAAGTGATCAAGAAGATGCTGTAGCCATTG
AATTGGATTTAGAAGGGCTTCAACCAGGATTTCATGCTATACATGTTCATGAATATGGAAGATGTGAAGCTCCTGATTTT
ACTACTGCTGGTAATCATCTGAATCCCCAAGGTAAGGAACATGGAATGATACATCCCGAAGGATCTCATTTAGGAGATTT
ACCAAATATCGAAGCAGATGCAGGCGGTTTAGTACATGCCGAACTTGAGCTCTCGGGAGCTTCGTTACAAGAAGGAAAAA
GTTCATTAATAAATAATGATGGGACCGCATTAATTGTCCATGAAGGTCAAGATGATGGAATGAGTCAACCAGGTGGAGAT
TCTGGAACAAGAATCGTTTGTGGAGAAATTCATGCAGAAAAGGAATCAGGAGATTCAGAAAAAGCACCGACTGATCCAAC
CGAGCAAAATGATGAACAGGAAGAATAA

Upstream 100 bases:

>100_bases
CGAACTTTTTAAAACAGCCTCTTTAAAGAAACATTCACTTTTTTGTTTAGATTATCAAACATTGCAGATACTGATATAAA
AGAGGAAAGGAGTCTATGTT

Downstream 100 bases:

>100_bases
GTAAATATATGAAAAGGGGCGTGGACAAAAGTGTAAATACCAGTGTCCAGCCCCTTATTTTTAACCCACATTTAAAAAAC
TAATATCCCATTTAAATAAC

Product: Cu-Zn superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MRPLILGLIMSLTLLLSACLLHNPKSLTIEMYNVDGDRVGTALLSDQEDAVAIELDLEGLQPGFHAIHVHEYGRCEAPDF
TTAGNHLNPQGKEHGMIHPEGSHLGDLPNIEADAGGLVHAELELSGASLQEGKSSLINNDGTALIVHEGQDDGMSQPGGD
SGTRIVCGEIHAEKESGDSEKAPTDPTEQNDEQEE

Sequences:

>Translated_195_residues
MRPLILGLIMSLTLLLSACLLHNPKSLTIEMYNVDGDRVGTALLSDQEDAVAIELDLEGLQPGFHAIHVHEYGRCEAPDF
TTAGNHLNPQGKEHGMIHPEGSHLGDLPNIEADAGGLVHAELELSGASLQEGKSSLINNDGTALIVHEGQDDGMSQPGGD
SGTRIVCGEIHAEKESGDSEKAPTDPTEQNDEQEE
>Mature_195_residues
MRPLILGLIMSLTLLLSACLLHNPKSLTIEMYNVDGDRVGTALLSDQEDAVAIELDLEGLQPGFHAIHVHEYGRCEAPDF
TTAGNHLNPQGKEHGMIHPEGSHLGDLPNIEADAGGLVHAELELSGASLQEGKSSLINNDGTALIVHEGQDDGMSQPGGD
SGTRIVCGEIHAEKESGDSEKAPTDPTEQNDEQEE

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI4826665, Length=124, Percent_Identity=36.2903225806452, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI4507149, Length=126, Percent_Identity=38.0952380952381, Blast_Score=68, Evalue=4e-12,
Organism=Escherichia coli, GI1787934, Length=147, Percent_Identity=33.3333333333333, Blast_Score=60, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71981876, Length=142, Percent_Identity=36.6197183098592, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI71981879, Length=133, Percent_Identity=37.593984962406, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI17136496, Length=149, Percent_Identity=34.8993288590604, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI45551081, Length=183, Percent_Identity=31.1475409836066, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24652737, Length=183, Percent_Identity=31.1475409836066, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI116007680, Length=183, Percent_Identity=31.1475409836066, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI85725006, Length=183, Percent_Identity=31.1475409836066, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 20729; Mature: 20729

Theoretical pI: Translated: 4.12; Mature: 4.12

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPLILGLIMSLTLLLSACLLHNPKSLTIEMYNVDGDRVGTALLSDQEDAVAIELDLEGL
CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHCCCCCEEEEEEECCCC
QPGFHAIHVHEYGRCEAPDFTTAGNHLNPQGKEHGMIHPEGSHLGDLPNIEADAGGLVHA
CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
ELELSGASLQEGKSSLINNDGTALIVHEGQDDGMSQPGGDSGTRIVCGEIHAEKESGDSE
EEEECCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCC
KAPTDPTEQNDEQEE
CCCCCCCCCCCCCCC
>Mature Secondary Structure
MRPLILGLIMSLTLLLSACLLHNPKSLTIEMYNVDGDRVGTALLSDQEDAVAIELDLEGL
CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHCCCCCEEEEEEECCCC
QPGFHAIHVHEYGRCEAPDFTTAGNHLNPQGKEHGMIHPEGSHLGDLPNIEADAGGLVHA
CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
ELELSGASLQEGKSSLINNDGTALIVHEGQDDGMSQPGGDSGTRIVCGEIHAEKESGDSE
EEEECCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCC
KAPTDPTEQNDEQEE
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]