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The map label for this gene is 23099792

Identifier: 23099792

GI number: 23099792

Start: 2392399

End: 2394525

Strand: Reverse

Name: 23099792

Synonym: OB2337

Alternate gene names: NA

Gene position: 2394525-2392399 (Counterclockwise)

Preceding gene: 23099794

Following gene: 23099787

Centisome position: 65.96

GC content: 29.81

Gene sequence:

>2127_bases
TTGGAGGATCATCAAATAATAAGTTATTTTCAGCGTAATAAATTTGAGTCAGGAATGGAATTACTTATAGACAAATATTG
TGTGACCGTAGAACGATTTGCTTTTCAAATAGGTGTTGATACTAATGAAATTTCAGATGTTGTACAAGAAACATTTATAA
GAACCAGTAAGAGCCTTACAAATTATCAAGATCAAAATGTAAATTTATCAACTTTGCTATATAAATGTACATTAAATGTT
GTTAAAAAGCTTAAGCGTAAAGAAAAAAGGAAAAGAAAGTCAGAGGAAATAGTAAATAAGCAACACCATATTCTGACTGA
TTATTTCGAAAGTGAAAGTCATGTTGTGCTGCATGAATGTATTCAGCATCTAGAAGATACATATAAATTTGCACTTATTC
TGTATTATTTTCATCAAAAACCGTATGAAGATATTGGTCAAATCTTACAACTATCAAGTGCTTCAGTAGAAAATAAAATT
TTTCAAGGTAAAGTGAGATTAACAGAGGAATCAACTTTCGAAAAAGATAATAATCCTATAGATAACTGGCTAAAGTCCTT
AAGTGAAGAATATAAATCACTTCCAGAAAAGACCTCTACCCAACAAATTCTTCATACTGTAAAAGGGGTACACGAAAAAA
AGAAGAAAAGATGGCTAACAAAGATAGCTATAGTATTGAGTTTAGTAGTATTTGTGGTAGTTGCAATTCCTATGTTTGAC
GATTTTAAAGATTCTCCTACTAATTTAACAGAACAAGAAAAAATGGAGCAGTATTTTGAACGAAAAAAAGAAGAATATAA
GCAAAATCTCGGTATAGAAAGTGTAGATGACTTTATTCAGGTTGAACGTGCATATGATCTAGTTATTCAGTTTAATAATG
TAACCAAGCAAACTGAAGATATCGATGACGCGGAGATACAATCGTATAAGGATATGATTGCAATGCTCTTAACAACGCCT
AAACAACTTGCAGAAAAACAGAAAAAGGAAAACAAAATATTCCTAAATCATCCAGATTTTTATACAGTACAAGTAAATAA
TAGACAAACGCTAGAAATTTACTTATCCAGTTTATTTAGAAAACATTCTATTGAAAAAAATCATAGACAAGAAATTATAA
ATAATCAAGAAAGTATCGATGAAATAAATGTATCAGAAGATATCTTAAAAGCGATAAATGCAATTAAAGATAATGGGTAT
ACCATTGAGCAATTAGAAGATGCGACAAGTCTTAGTTTGAGAATAGACAGAAGTTGGGCAATACAATATATTCACGATGT
AGAAGGATCTGAGCCATATTTAAATATGATATCCATCCAAGAAGACATTGACTCTTATTACAATGGAGAACATATTAATT
TAGGAGATATTCTTTTGCAAATAGAGGAAATATATAGAACATATCCCAATGAACGTCATAATATCTTTGTTCAACAAGAA
TTAGCTATAACAGGTCAGTATGTGTTAATAGATTATTTATTTGTAAGAGATAAATTTTATTCTTATGAAATAGATACAAC
AAACCCATTATCTAAGGAACATCAAAAAGAGCTACTTTCCTTTGTTCAAGACCATCAGGATTCTATATATTGGACTATAG
TAAATGAAGTAGTTCAAGAATTAAAGAAAAATAATTGGATTCCTAAAGAGGAACTTGCACATCGAGAATATAGGTATATT
TTTATAGATCCTTATCAAAATTTAACGGAGGATAGTTTTTTATCTTTTGAAAAGTGGCCAGTTGTCGATACGACGCATGA
CATTTATCATCATTATATTGAGCAGAACGAGCAGCTAACTGCATTATCGGATGCGTCGGCTAAAGAGGTATTGTCACTTT
TTATGTATGCATCCGTAAAGCCAGATGAACAGCTAGTTAACAAATTAAAGACGGAGAATAGCTTGGATAGTGAAAGTTAT
GACTGGTATGATATTTGGAGAAATAGTTATTATTTTATTGAATTGAAGAATGAAGAAGATGAAGCGATTTATGATTTTAT
ATCTTTTCCTAGTATTTATAATGAGGAAGAGGCTTTTCAAATATCTATTGAGTTAATTAAACAGGATGATATATGGTTAA
TAAATAGAATTTATGATAGAACAAAAACAAAAGAGGCTCCATCTTAA

Upstream 100 bases:

>100_bases
AAATTATAAACAAGAAAAATAGAATTTTTTTGAAATACTGCAACCAAATTAAAGTTACATACGTTATATATGTATATCAA
TCATTGAAAGGGGGATTTGT

Downstream 100 bases:

>100_bases
GAGCCTCTTTATCGACCTTTTTTGAATCACGCCTTAAACACAGGGGCGCTTTCGCTTTTCTTTATTACAAACGTTTTTCT
AACGCTTCTTTTTGATCTTC

Product: hypothetical protein

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily

Number of amino acids: Translated: 708; Mature: 708

Protein sequence:

>708_residues
MEDHQIISYFQRNKFESGMELLIDKYCVTVERFAFQIGVDTNEISDVVQETFIRTSKSLTNYQDQNVNLSTLLYKCTLNV
VKKLKRKEKRKRKSEEIVNKQHHILTDYFESESHVVLHECIQHLEDTYKFALILYYFHQKPYEDIGQILQLSSASVENKI
FQGKVRLTEESTFEKDNNPIDNWLKSLSEEYKSLPEKTSTQQILHTVKGVHEKKKKRWLTKIAIVLSLVVFVVVAIPMFD
DFKDSPTNLTEQEKMEQYFERKKEEYKQNLGIESVDDFIQVERAYDLVIQFNNVTKQTEDIDDAEIQSYKDMIAMLLTTP
KQLAEKQKKENKIFLNHPDFYTVQVNNRQTLEIYLSSLFRKHSIEKNHRQEIINNQESIDEINVSEDILKAINAIKDNGY
TIEQLEDATSLSLRIDRSWAIQYIHDVEGSEPYLNMISIQEDIDSYYNGEHINLGDILLQIEEIYRTYPNERHNIFVQQE
LAITGQYVLIDYLFVRDKFYSYEIDTTNPLSKEHQKELLSFVQDHQDSIYWTIVNEVVQELKKNNWIPKEELAHREYRYI
FIDPYQNLTEDSFLSFEKWPVVDTTHDIYHHYIEQNEQLTALSDASAKEVLSLFMYASVKPDEQLVNKLKTENSLDSESY
DWYDIWRNSYYFIELKNEEDEAIYDFISFPSIYNEEEAFQISIELIKQDDIWLINRIYDRTKTKEAPS

Sequences:

>Translated_708_residues
MEDHQIISYFQRNKFESGMELLIDKYCVTVERFAFQIGVDTNEISDVVQETFIRTSKSLTNYQDQNVNLSTLLYKCTLNV
VKKLKRKEKRKRKSEEIVNKQHHILTDYFESESHVVLHECIQHLEDTYKFALILYYFHQKPYEDIGQILQLSSASVENKI
FQGKVRLTEESTFEKDNNPIDNWLKSLSEEYKSLPEKTSTQQILHTVKGVHEKKKKRWLTKIAIVLSLVVFVVVAIPMFD
DFKDSPTNLTEQEKMEQYFERKKEEYKQNLGIESVDDFIQVERAYDLVIQFNNVTKQTEDIDDAEIQSYKDMIAMLLTTP
KQLAEKQKKENKIFLNHPDFYTVQVNNRQTLEIYLSSLFRKHSIEKNHRQEIINNQESIDEINVSEDILKAINAIKDNGY
TIEQLEDATSLSLRIDRSWAIQYIHDVEGSEPYLNMISIQEDIDSYYNGEHINLGDILLQIEEIYRTYPNERHNIFVQQE
LAITGQYVLIDYLFVRDKFYSYEIDTTNPLSKEHQKELLSFVQDHQDSIYWTIVNEVVQELKKNNWIPKEELAHREYRYI
FIDPYQNLTEDSFLSFEKWPVVDTTHDIYHHYIEQNEQLTALSDASAKEVLSLFMYASVKPDEQLVNKLKTENSLDSESY
DWYDIWRNSYYFIELKNEEDEAIYDFISFPSIYNEEEAFQISIELIKQDDIWLINRIYDRTKTKEAPS
>Mature_708_residues
MEDHQIISYFQRNKFESGMELLIDKYCVTVERFAFQIGVDTNEISDVVQETFIRTSKSLTNYQDQNVNLSTLLYKCTLNV
VKKLKRKEKRKRKSEEIVNKQHHILTDYFESESHVVLHECIQHLEDTYKFALILYYFHQKPYEDIGQILQLSSASVENKI
FQGKVRLTEESTFEKDNNPIDNWLKSLSEEYKSLPEKTSTQQILHTVKGVHEKKKKRWLTKIAIVLSLVVFVVVAIPMFD
DFKDSPTNLTEQEKMEQYFERKKEEYKQNLGIESVDDFIQVERAYDLVIQFNNVTKQTEDIDDAEIQSYKDMIAMLLTTP
KQLAEKQKKENKIFLNHPDFYTVQVNNRQTLEIYLSSLFRKHSIEKNHRQEIINNQESIDEINVSEDILKAINAIKDNGY
TIEQLEDATSLSLRIDRSWAIQYIHDVEGSEPYLNMISIQEDIDSYYNGEHINLGDILLQIEEIYRTYPNERHNIFVQQE
LAITGQYVLIDYLFVRDKFYSYEIDTTNPLSKEHQKELLSFVQDHQDSIYWTIVNEVVQELKKNNWIPKEELAHREYRYI
FIDPYQNLTEDSFLSFEKWPVVDTTHDIYHHYIEQNEQLTALSDASAKEVLSLFMYASVKPDEQLVNKLKTENSLDSESY
DWYDIWRNSYYFIELKNEEDEAIYDFISFPSIYNEEEAFQISIELIKQDDIWLINRIYDRTKTKEAPS

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 84227; Mature: 84227

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCCCCCCCCHHEEEEEEEECCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure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HHHHHHHHCCCCCCCCHHEEEEEEEECCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA