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The map label for this gene is ymdB [C]

Identifier: 23099743

GI number: 23099743

Start: 2330653

End: 2331210

Strand: Reverse

Name: ymdB [C]

Synonym: OB2288

Alternate gene names: 23099743

Gene position: 2331210-2330653 (Counterclockwise)

Preceding gene: 23099744

Following gene: 23099742

Centisome position: 64.21

GC content: 34.95

Gene sequence:

>558_bases
ATGAAACATAATATAAATGATAATACGCTTGAAATAGTTGTTGGTGATATAACGAAGGAAACAACGAATGTTATTGTAAA
TGCAGCAAACGGAAGCTTATTAGGTGGTGGAGGTGTTGATGGGGCTATCCATCATGCCGCAGGGCCAGAATTATTAAAAG
CATGTCAAGAGATGAGAAATAACGAACTTAATGGTGAAGAATTACCAACGGGTGAAGTTATTATTACTTCCGGATTCCAA
TTACCGTCTCGTTTTATTATCCACACGGTAGGGCCAATCTGGAATCAGACTCCTGACCTACAAGAAGAATTATTAGCTAA
CTGTTATCGTAATGCTTTGGAATTAGTAAAAGTAAAGAAATTATCTAGCATTTCATTCCCTTCGATTTCAACAGGAGTGT
ATGGTTATCCTATTCATGAAGCAGCAGCAATCGCTTTACAGACAATTATTCAATTTCTACAAGAAAATGATGTGGGGCTT
GTAAAGGTCGTTTTATTTAGTGAAAGAGACTATAGCATTTATCAAGAAAAATTGAAGTATTTAATAGAAAAAATCTAA

Upstream 100 bases:

>100_bases
CTATTTGGTTAACGGAAAATCTACCGTGAATTATCAGCTTACAGATGAAGATATACAGGATTTATTGTTTAACGAAACAA
AGGATTAGGTAGGTGAGACG

Downstream 100 bases:

>100_bases
GCATTGGATTACCGAACTAATAAATAGTTCGGTCTTTTATTTATGAGGATTAGTGCCACTTTAACTCTTGTGTTATCGTC
ATCATCAGCTCGCTACCGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MKHNINDNTLEIVVGDITKETTNVIVNAANGSLLGGGGVDGAIHHAAGPELLKACQEMRNNELNGEELPTGEVIITSGFQ
LPSRFIIHTVGPIWNQTPDLQEELLANCYRNALELVKVKKLSSISFPSISTGVYGYPIHEAAAIALQTIIQFLQENDVGL
VKVVLFSERDYSIYQEKLKYLIEKI

Sequences:

>Translated_185_residues
MKHNINDNTLEIVVGDITKETTNVIVNAANGSLLGGGGVDGAIHHAAGPELLKACQEMRNNELNGEELPTGEVIITSGFQ
LPSRFIIHTVGPIWNQTPDLQEELLANCYRNALELVKVKKLSSISFPSISTGVYGYPIHEAAAIALQTIIQFLQENDVGL
VKVVLFSERDYSIYQEKLKYLIEKI
>Mature_185_residues
MKHNINDNTLEIVVGDITKETTNVIVNAANGSLLGGGGVDGAIHHAAGPELLKACQEMRNNELNGEELPTGEVIITSGFQ
LPSRFIIHTVGPIWNQTPDLQEELLANCYRNALELVKVKKLSSISFPSISTGVYGYPIHEAAAIALQTIIQFLQENDVGL
VKVVLFSERDYSIYQEKLKYLIEKI

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=167, Percent_Identity=50.2994011976048, Blast_Score=150, Evalue=7e-37,
Organism=Homo sapiens, GI13569840, Length=177, Percent_Identity=41.8079096045198, Blast_Score=143, Evalue=1e-34,
Organism=Homo sapiens, GI207450721, Length=166, Percent_Identity=36.7469879518072, Blast_Score=98, Evalue=4e-21,
Organism=Homo sapiens, GI8923143, Length=166, Percent_Identity=36.7469879518072, Blast_Score=98, Evalue=5e-21,
Organism=Homo sapiens, GI20336746, Length=175, Percent_Identity=32, Blast_Score=89, Evalue=2e-18,
Organism=Homo sapiens, GI154813199, Length=144, Percent_Identity=35.4166666666667, Blast_Score=81, Evalue=6e-16,
Organism=Homo sapiens, GI93141018, Length=161, Percent_Identity=31.055900621118, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI93141020, Length=161, Percent_Identity=31.055900621118, Blast_Score=77, Evalue=7e-15,
Organism=Homo sapiens, GI4758496, Length=161, Percent_Identity=31.055900621118, Blast_Score=77, Evalue=7e-15,
Organism=Homo sapiens, GI165377137, Length=144, Percent_Identity=31.9444444444444, Blast_Score=76, Evalue=2e-14,
Organism=Escherichia coli, GI1787283, Length=170, Percent_Identity=45.2941176470588, Blast_Score=154, Evalue=5e-39,
Organism=Caenorhabditis elegans, GI17538214, Length=159, Percent_Identity=43.3962264150943, Blast_Score=115, Evalue=9e-27,
Organism=Drosophila melanogaster, GI24586353, Length=158, Percent_Identity=31.0126582278481, Blast_Score=70, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 20317; Mature: 20317

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHNINDNTLEIVVGDITKETTNVIVNAANGSLLGGGGVDGAIHHAAGPELLKACQEMRN
CCCCCCCCEEEEEEECCCCCCHHEEEECCCCCEECCCCCCCHHHCCCCHHHHHHHHHHHC
NELNGEELPTGEVIITSGFQLPSRFIIHTVGPIWNQTPDLQEELLANCYRNALELVKVKK
CCCCCCCCCCCCEEEECCCCCCHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
LSSISFPSISTGVYGYPIHEAAAIALQTIIQFLQENDVGLVKVVLFSERDYSIYQEKLKY
HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHH
LIEKI
HHHHC
>Mature Secondary Structure
MKHNINDNTLEIVVGDITKETTNVIVNAANGSLLGGGGVDGAIHHAAGPELLKACQEMRN
CCCCCCCCEEEEEEECCCCCCHHEEEECCCCCEECCCCCCCHHHCCCCHHHHHHHHHHHC
NELNGEELPTGEVIITSGFQLPSRFIIHTVGPIWNQTPDLQEELLANCYRNALELVKVKK
CCCCCCCCCCCCEEEECCCCCCHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
LSSISFPSISTGVYGYPIHEAAAIALQTIIQFLQENDVGLVKVVLFSERDYSIYQEKLKY
HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHH
LIEKI
HHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]