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The map label for this gene is ccpN [H]

Identifier: 23099402

GI number: 23099402

Start: 1974102

End: 1974731

Strand: Reverse

Name: ccpN [H]

Synonym: OB1947

Alternate gene names: 23099402

Gene position: 1974731-1974102 (Counterclockwise)

Preceding gene: 23099403

Following gene: 23099401

Centisome position: 54.39

GC content: 37.94

Gene sequence:

>630_bases
ATGGACTTAACAAAACGACAACAGCAAATAGTAGAAATTGTAAAAGCTGATGGTCCAATTACTGGGGAGCATATTGCAGA
CCGACTAGATTTAACTCGAGCTACCCTTCGTCCGGATTTAGCTATCTTAACAATGGCTGGATTCTTGGATGCAAGACCAC
GAGTAGGTTATTTCTATACGGGAAAAACCGCTTCAGAGCTATTATCTGAGAAAATCAAGAAATACAAGGTGCATGAATTT
CAACAGGTGCCTGTCGCGGTTAAAGAAAGTGTGTCGGTGTATGATGCAATTTCAACCATGTTTTTAGAAGATGTGGGTAC
ATTATTCGTAGTTGATGACCACGCTTGTTTAACTGGTGTACTATCCAGAAAAGATTTACTTAGAACAAGTATGGGTCACC
AAGACTTAACCAGCATTCCAGTGCATATTATAATGACACGTATGCCAAATATTACAGTGTGTCGTAGAGATGATTTGTTA
ATTGATGCAGCTCATAATTTAATTTCAAAACAAATCGATGGACTTCCCGTTGTGAAGGATACTGAGCGTGGATTAGAAGT
AGTAGGTCGAATAACGAAAACAACAATGACTAAATTGTTAGTGGAACTAACTACGGATGAAAATATTTAA

Upstream 100 bases:

>100_bases
AGATGCTTGTTTGTACTATAACTGATACAATTAATGATGGATAAAGGTCGCAATCAAAATTAAATAGCAACGAATATATT
GCTATTTGGGTGGTGAAAAA

Downstream 100 bases:

>100_bases
TCATTATTGATTCTTAAGAGAGGGGTAATATGGATGTCTACCCAACCAATTATTTATGTGCTTTCTGACTCTGTAGGGGA
AACTGCGGAATTGGTAGTGA

Product: hypothetical protein

Products: NA

Alternate protein names: Catabolite control protein N; Control catabolite protein of gluconeogenesis [H]

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MDLTKRQQQIVEIVKADGPITGEHIADRLDLTRATLRPDLAILTMAGFLDARPRVGYFYTGKTASELLSEKIKKYKVHEF
QQVPVAVKESVSVYDAISTMFLEDVGTLFVVDDHACLTGVLSRKDLLRTSMGHQDLTSIPVHIIMTRMPNITVCRRDDLL
IDAAHNLISKQIDGLPVVKDTERGLEVVGRITKTTMTKLLVELTTDENI

Sequences:

>Translated_209_residues
MDLTKRQQQIVEIVKADGPITGEHIADRLDLTRATLRPDLAILTMAGFLDARPRVGYFYTGKTASELLSEKIKKYKVHEF
QQVPVAVKESVSVYDAISTMFLEDVGTLFVVDDHACLTGVLSRKDLLRTSMGHQDLTSIPVHIIMTRMPNITVCRRDDLL
IDAAHNLISKQIDGLPVVKDTERGLEVVGRITKTTMTKLLVELTTDENI
>Mature_209_residues
MDLTKRQQQIVEIVKADGPITGEHIADRLDLTRATLRPDLAILTMAGFLDARPRVGYFYTGKTASELLSEKIKKYKVHEF
QQVPVAVKESVSVYDAISTMFLEDVGTLFVVDDHACLTGVLSRKDLLRTSMGHQDLTSIPVHIIMTRMPNITVCRRDDLL
IDAAHNLISKQIDGLPVVKDTERGLEVVGRITKTTMTKLLVELTTDENI

Specific function: Transcription repressor that binds to the promoter of gapB and pckA genes, preventing their expression. Acts as a regulator for catabolite repression of gluconeogenic genes [H]

COG id: COG0517

COG function: function code R; FOG: CBS domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR013196
- InterPro:   IPR001034
- InterPro:   IPR016842
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00571 CBS; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 23359; Mature: 23359

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLTKRQQQIVEIVKADGPITGEHIADRLDLTRATLRPDLAILTMAGFLDARPRVGYFYT
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEC
GKTASELLSEKIKKYKVHEFQQVPVAVKESVSVYDAISTMFLEDVGTLFVVDDHACLTGV
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHH
LSRKDLLRTSMGHQDLTSIPVHIIMTRMPNITVCRRDDLLIDAAHNLISKQIDGLPVVKD
HHHHHHHHHHCCCCCHHHHHHHHEEECCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCC
TERGLEVVGRITKTTMTKLLVELTTDENI
CHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDLTKRQQQIVEIVKADGPITGEHIADRLDLTRATLRPDLAILTMAGFLDARPRVGYFYT
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEC
GKTASELLSEKIKKYKVHEFQQVPVAVKESVSVYDAISTMFLEDVGTLFVVDDHACLTGV
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHH
LSRKDLLRTSMGHQDLTSIPVHIIMTRMPNITVCRRDDLLIDAAHNLISKQIDGLPVVKD
HHHHHHHHHHCCCCCHHHHHHHHEEECCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCC
TERGLEVVGRITKTTMTKLLVELTTDENI
CHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]