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The map label for this gene is stc [H]

Identifier: 23098803

GI number: 23098803

Start: 1391040

End: 1392398

Strand: Reverse

Name: stc [H]

Synonym: OB1348

Alternate gene names: 23098803

Gene position: 1392398-1391040 (Counterclockwise)

Preceding gene: 23098808

Following gene: 23098802

Centisome position: 38.35

GC content: 35.98

Gene sequence:

>1359_bases
ATGAATGATTATTTCTTTGAGCAATTGCTAGAAGCAGAAGACGATGCAATTACAATTGTAGATACAGATAGAAGGGTATT
ACATTGGAATAATGCGGCAGTAGACACGTACAACATTGAGAAAACTACAATTATTGGTAAGCCGATTACAAACTTTTTTG
CCTACAATGACTTGATGGTAATGAAAGTTCTAGATAGCAAACAAGCAGTACAAAATCAATACCATCGGCCAAGAAAAGAT
AAGCATGTAGTTGTAAATACTCTCCCCGTCTTTGATAACAATCAAGATTTAATTGGGGCCATATCTGTGGAGAGAGATAT
TACCCAAATTGTAAAGTTAAATGACAATTTAGAGTCTACGTCTGCAGAATTAAATGAACTGCGGCAAAAGGTTTATCCTG
CAAACTCTACATCTCCATTTGTGAAGCTAAAAGGAAAAAGCAATGCATTGCAACAGATAATACAATTGGCTCGTAAGGCA
GCTAGTACAAATGCAACTGCATTGATCTTAGGAGAAAGCGGAACAGGAAAAGAAGTTTGTGCAAAAGCTATACACGAAGC
TAGCGATCGACGAAACCAACCTTTTATCCCCGTTAACTGTGGCGCCATACCAAGCGCTTTATTTGAAAGTGAATTATTTG
GCTATGAAGGTGGGTCGTTTACTGGAGCTGAGAAGAAAGGTAAAGCAGGTAAAATTGAAATGGCTGACGGTGGCACGCTT
TTTTTAGACGAGGTTGGAGAATTACCATTAGAGATGCAAGTAAAGCTATTACGAGTATTACAAGAGAATCGAATTTATCG
AATTGGTGATTCACAAGGGAAACAGGTCAATGTTCGGTTTATCGCAGCAACCAATCAAAAATTAGAGCAACTAATGGATG
AAAAACAATTTCGTTCCGATCTTTTTTATAGGTTAAATGTTATCCAATTAACCATGCCACCTCTTCGTGAAAGATTAGAG
GACATTGAGATACTTGCAAAAAGTTTTTCTGACCAATTTGCAAAAAAATATCAAGTATTAGTACCTGAAATTTCAGAAGA
GGCTTATGAATACTTAAATCAATACAAATGGCCTGGGAATATCCGTGAACTACGTAATTTAATGGAACGAATCATCATTC
TTCACGAGAACTCTCTAGTCAAAAAGGAAGATATGCAACGTTATCTGCCACAAGCAACTGATTTCCAATCTAGCGAAACA
AGTTCCAATCTACCATTGGAAAAAGAATTGATGGAAAAACAATTAATTGAGGCTACATTACAGCAACTAGAAGGAAATAA
GTCAAAAGCAGCCGAAAAACTGGGAATATCAAGAGTAACTCTCTATCATAAAATTAAAAAATATAATATAACTGTATAA

Upstream 100 bases:

>100_bases
TCTTAATCCGTGGAAAAATCAGAAATTTGTTGTATACTATATTTACAGTTTTTGTTTAGAAAATTTACACTCACCTTTAC
AATGGAGGAGGTTTCTCTAA

Downstream 100 bases:

>100_bases
TAATTCGTATATTTATTCTACTAAATTATGGTTTTCGACAATATTACCTGTTTATATGTAAGCATTTTCATCTAGGTATT
TGCTACTCTTTCATTATCCC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MNDYFFEQLLEAEDDAITIVDTDRRVLHWNNAAVDTYNIEKTTIIGKPITNFFAYNDLMVMKVLDSKQAVQNQYHRPRKD
KHVVVNTLPVFDNNQDLIGAISVERDITQIVKLNDNLESTSAELNELRQKVYPANSTSPFVKLKGKSNALQQIIQLARKA
ASTNATALILGESGTGKEVCAKAIHEASDRRNQPFIPVNCGAIPSALFESELFGYEGGSFTGAEKKGKAGKIEMADGGTL
FLDEVGELPLEMQVKLLRVLQENRIYRIGDSQGKQVNVRFIAATNQKLEQLMDEKQFRSDLFYRLNVIQLTMPPLRERLE
DIEILAKSFSDQFAKKYQVLVPEISEEAYEYLNQYKWPGNIRELRNLMERIIILHENSLVKKEDMQRYLPQATDFQSSET
SSNLPLEKELMEKQLIEATLQQLEGNKSKAAEKLGISRVTLYHKIKKYNITV

Sequences:

>Translated_452_residues
MNDYFFEQLLEAEDDAITIVDTDRRVLHWNNAAVDTYNIEKTTIIGKPITNFFAYNDLMVMKVLDSKQAVQNQYHRPRKD
KHVVVNTLPVFDNNQDLIGAISVERDITQIVKLNDNLESTSAELNELRQKVYPANSTSPFVKLKGKSNALQQIIQLARKA
ASTNATALILGESGTGKEVCAKAIHEASDRRNQPFIPVNCGAIPSALFESELFGYEGGSFTGAEKKGKAGKIEMADGGTL
FLDEVGELPLEMQVKLLRVLQENRIYRIGDSQGKQVNVRFIAATNQKLEQLMDEKQFRSDLFYRLNVIQLTMPPLRERLE
DIEILAKSFSDQFAKKYQVLVPEISEEAYEYLNQYKWPGNIRELRNLMERIIILHENSLVKKEDMQRYLPQATDFQSSET
SSNLPLEKELMEKQLIEATLQQLEGNKSKAAEKLGISRVTLYHKIKKYNITV
>Mature_452_residues
MNDYFFEQLLEAEDDAITIVDTDRRVLHWNNAAVDTYNIEKTTIIGKPITNFFAYNDLMVMKVLDSKQAVQNQYHRPRKD
KHVVVNTLPVFDNNQDLIGAISVERDITQIVKLNDNLESTSAELNELRQKVYPANSTSPFVKLKGKSNALQQIIQLARKA
ASTNATALILGESGTGKEVCAKAIHEASDRRNQPFIPVNCGAIPSALFESELFGYEGGSFTGAEKKGKAGKIEMADGGTL
FLDEVGELPLEMQVKLLRVLQENRIYRIGDSQGKQVNVRFIAATNQKLEQLMDEKQFRSDLFYRLNVIQLTMPPLRERLE
DIEILAKSFSDQFAKKYQVLVPEISEEAYEYLNQYKWPGNIRELRNLMERIIILHENSLVKKEDMQRYLPQATDFQSSET
SSNLPLEKELMEKQLIEATLQQLEGNKSKAAEKLGISRVTLYHKIKKYNITV

Specific function: Unknown

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=462, Percent_Identity=37.4458874458874, Blast_Score=278, Evalue=6e-76,
Organism=Escherichia coli, GI87082117, Length=318, Percent_Identity=45.5974842767296, Blast_Score=272, Evalue=3e-74,
Organism=Escherichia coli, GI1788550, Length=346, Percent_Identity=42.7745664739884, Blast_Score=268, Evalue=5e-73,
Organism=Escherichia coli, GI1789087, Length=319, Percent_Identity=41.692789968652, Blast_Score=256, Evalue=3e-69,
Organism=Escherichia coli, GI1790437, Length=318, Percent_Identity=43.0817610062893, Blast_Score=252, Evalue=3e-68,
Organism=Escherichia coli, GI1786524, Length=317, Percent_Identity=41.3249211356467, Blast_Score=244, Evalue=1e-65,
Organism=Escherichia coli, GI1790299, Length=335, Percent_Identity=38.8059701492537, Blast_Score=231, Evalue=6e-62,
Organism=Escherichia coli, GI87081872, Length=319, Percent_Identity=41.0658307210031, Blast_Score=228, Evalue=5e-61,
Organism=Escherichia coli, GI1788905, Length=305, Percent_Identity=38.3606557377049, Blast_Score=224, Evalue=8e-60,
Organism=Escherichia coli, GI87082152, Length=337, Percent_Identity=38.2789317507418, Blast_Score=212, Evalue=3e-56,
Organism=Escherichia coli, GI1787583, Length=393, Percent_Identity=32.0610687022901, Blast_Score=198, Evalue=6e-52,
Organism=Escherichia coli, GI87081858, Length=450, Percent_Identity=26.8888888888889, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1789828, Length=229, Percent_Identity=34.4978165938865, Blast_Score=119, Evalue=3e-28,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 51500; Mature: 51500

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: PS50112 PAS ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDYFFEQLLEAEDDAITIVDTDRRVLHWNNAAVDTYNIEKTTIIGKPITNFFAYNDLMV
CCHHHHHHHHCCCCCEEEEEECCCEEEEECCCEEEEECCCEEEEECCCHHHHHHHCCCCE
MKVLDSKQAVQNQYHRPRKDKHVVVNTLPVFDNNQDLIGAISVERDITQIVKLNDNLEST
EHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEEHHHHHHHHHHHCCCCHHH
SAELNELRQKVYPANSTSPFVKLKGKSNALQQIIQLARKAASTNATALILGESGTGKEVC
HHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHH
AKAIHEASDRRNQPFIPVNCGAIPSALFESELFGYEGGSFTGAEKKGKAGKIEMADGGTL
HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCEE
FLDEVGELPLEMQVKLLRVLQENRIYRIGDSQGKQVNVRFIAATNQKLEQLMDEKQFRSD
EEHHHCCCCHHHHHHHHHHHHHCCEEEECCCCCCEEEEEEEEECHHHHHHHHHHHHHHHH
LFYRLNVIQLTMPPLRERLEDIEILAKSFSDQFAKKYQVLVPEISEEAYEYLNQYKWPGN
HHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC
IRELRNLMERIIILHENSLVKKEDMQRYLPQATDFQSSETSSNLPLEKELMEKQLIEATL
HHHHHHHHHHHEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
QQLEGNKSKAAEKLGISRVTLYHKIKKYNITV
HHHCCCHHHHHHHHCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNDYFFEQLLEAEDDAITIVDTDRRVLHWNNAAVDTYNIEKTTIIGKPITNFFAYNDLMV
CCHHHHHHHHCCCCCEEEEEECCCEEEEECCCEEEEECCCEEEEECCCHHHHHHHCCCCE
MKVLDSKQAVQNQYHRPRKDKHVVVNTLPVFDNNQDLIGAISVERDITQIVKLNDNLEST
EHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEEHHHHHHHHHHHCCCCHHH
SAELNELRQKVYPANSTSPFVKLKGKSNALQQIIQLARKAASTNATALILGESGTGKEVC
HHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHH
AKAIHEASDRRNQPFIPVNCGAIPSALFESELFGYEGGSFTGAEKKGKAGKIEMADGGTL
HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCEE
FLDEVGELPLEMQVKLLRVLQENRIYRIGDSQGKQVNVRFIAATNQKLEQLMDEKQFRSD
EEHHHCCCCHHHHHHHHHHHHHCCEEEECCCCCCEEEEEEEEECHHHHHHHHHHHHHHHH
LFYRLNVIQLTMPPLRERLEDIEILAKSFSDQFAKKYQVLVPEISEEAYEYLNQYKWPGN
HHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC
IRELRNLMERIIILHENSLVKKEDMQRYLPQATDFQSSETSSNLPLEKELMEKQLIEATL
HHHHHHHHHHHEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
QQLEGNKSKAAEKLGISRVTLYHKIKKYNITV
HHHCCCHHHHHHHHCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA