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The map label for this gene is kdgT2 [H]

Identifier: 23098466

GI number: 23098466

Start: 1054650

End: 1055645

Strand: Direct

Name: kdgT2 [H]

Synonym: OB1011

Alternate gene names: 23098466

Gene position: 1054650-1055645 (Clockwise)

Preceding gene: 23098465

Following gene: 23098467

Centisome position: 29.05

GC content: 38.25

Gene sequence:

>996_bases
ATGAAAATTAAAGCTACGATTGAACGAATTCCAGGAGGTATGATGGTTGTACCATTGTTACTTGCTGCAACAATTAATAC
GATAGCTCCAGATTTACTTCGTATTGGGAATTTCACACAAGCCTTGTTCGTAGATGGAGCAAGCACGTTAATTGCACTAT
TTCTTTTATTTACAGGTGCACAAATTAATCTACGTAATGTTGGGGTTAGTTTAGGTAAAGGAGCAACACTACTTGCTACT
AAATGGTTCGCGGGTGCGCTCGTTGGTTTAATTGCTTTTATGATGATGGGAGATAATGGGTTGTGGCTTGGATTAGCACC
TATTGCCATTATTGCAGCCATGACAAATAGTAATGGTGGATTGTACGTGGCGCTTGTCGGACAATATGGAGATAAAACAG
ATCGTGCTGCGTATTCACTTTTAGCATTAAATGATGGTCCATTTCTAACTATGATTGCATTATCGATTTTCGGAGCAATG
GGATTTGTTGAAGGAATGTTCTCATTTGTTTCCTTCATATCAGTATTACTACCGATTGTAGTTGGTATGGTACTTGGTAA
TTTAGATGAAGATTTAAGAAGTTTCTTCAGCACGGGAAGTTCTGTGTTAATTCCTTTCTTCGCATTTGCATTAGGTATGG
GAATTGATTTTTCAAGTATTATTGAAGGTGGACTTGGTGGAATTATATTAGGATTACTAACTGTATTCTTCACTGGTACG
GTTGGATACTTTGTATTTAAAGCAATGAAATGGAATCCTATTGTTGGTGCTGCAGAAGGTTCAACTGCTGGTAATGCAGT
AGCAACACCAGCTGCTATAGCTGCTGCAAGTCCGGCATTTGCAGCGAATGTAGAATTAGCTACGGTCCAAGTAGCGGCAG
CAGTAGTTACGACGGCAATATTACTACCAATATATATTGGTTTTCTTGTTAAACGCCTAGAGAAAAAAGGTGTAAACATA
CCAGATGACTACGTTGTTCAAGATAATAAGAAATAA

Upstream 100 bases:

>100_bases
AAAAAGTTCTGTTAGTTGTACTATTATTATTGAAAACGCTTTATATATCAAAAGAGTTGTTTAAAAATTAAACAATCTAT
ATAATTGAGGAGGATTTGAT

Downstream 100 bases:

>100_bases
AATGGTTTATTAAAGTGGGTGGTACAACATGGCAAAACAGATTGCAATTATAGCGGATGATTTGACCGGAGCGAATGACA
GTGGGGTACAATTGACTGAA

Product: 2-keto-3-deoxygluconate permease

Products: Proton [Cytoplasm]; 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

Alternate protein names: KDG permease 2 [H]

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MKIKATIERIPGGMMVVPLLLAATINTIAPDLLRIGNFTQALFVDGASTLIALFLLFTGAQINLRNVGVSLGKGATLLAT
KWFAGALVGLIAFMMMGDNGLWLGLAPIAIIAAMTNSNGGLYVALVGQYGDKTDRAAYSLLALNDGPFLTMIALSIFGAM
GFVEGMFSFVSFISVLLPIVVGMVLGNLDEDLRSFFSTGSSVLIPFFAFALGMGIDFSSIIEGGLGGIILGLLTVFFTGT
VGYFVFKAMKWNPIVGAAEGSTAGNAVATPAAIAAASPAFAANVELATVQVAAAVVTTAILLPIYIGFLVKRLEKKGVNI
PDDYVVQDNKK

Sequences:

>Translated_331_residues
MKIKATIERIPGGMMVVPLLLAATINTIAPDLLRIGNFTQALFVDGASTLIALFLLFTGAQINLRNVGVSLGKGATLLAT
KWFAGALVGLIAFMMMGDNGLWLGLAPIAIIAAMTNSNGGLYVALVGQYGDKTDRAAYSLLALNDGPFLTMIALSIFGAM
GFVEGMFSFVSFISVLLPIVVGMVLGNLDEDLRSFFSTGSSVLIPFFAFALGMGIDFSSIIEGGLGGIILGLLTVFFTGT
VGYFVFKAMKWNPIVGAAEGSTAGNAVATPAAIAAASPAFAANVELATVQVAAAVVTTAILLPIYIGFLVKRLEKKGVNI
PDDYVVQDNKK
>Mature_331_residues
MKIKATIERIPGGMMVVPLLLAATINTIAPDLLRIGNFTQALFVDGASTLIALFLLFTGAQINLRNVGVSLGKGATLLAT
KWFAGALVGLIAFMMMGDNGLWLGLAPIAIIAAMTNSNGGLYVALVGQYGDKTDRAAYSLLALNDGPFLTMIALSIFGAM
GFVEGMFSFVSFISVLLPIVVGMVLGNLDEDLRSFFSTGSSVLIPFFAFALGMGIDFSSIIEGGLGGIILGLLTVFFTGT
VGYFVFKAMKWNPIVGAAEGSTAGNAVATPAAIAAASPAFAANVELATVQVAAAVVTTAILLPIYIGFLVKRLEKKGVNI
PDDYVVQDNKK

Specific function: The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kdgT transporter family [H]

Homologues:

Organism=Escherichia coli, GI87082349, Length=332, Percent_Identity=37.9518072289157, Blast_Score=177, Evalue=9e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004684
- ProDom:   PD024513 [H]

Pfam domain/function: PF03812 KdgT [H]

EC number: NA

Molecular weight: Translated: 34464; Mature: 34464

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKATIERIPGGMMVVPLLLAATINTIAPDLLRIGNFTQALFVDGASTLIALFLLFTGA
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHCCC
QINLRNVGVSLGKGATLLATKWFAGALVGLIAFMMMGDNGLWLGLAPIAIIAAMTNSNGG
EEEEHHCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHCCCCCC
LYVALVGQYGDKTDRAAYSLLALNDGPFLTMIALSIFGAMGFVEGMFSFVSFISVLLPIV
EEEEEEECCCCCHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGMVLGNLDEDLRSFFSTGSSVLIPFFAFALGMGIDFSSIIEGGLGGIILGLLTVFFTGT
HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHH
VGYFVFKAMKWNPIVGAAEGSTAGNAVATPAAIAAASPAFAANVELATVQVAAAVVTTAI
HHHHHHHHHCCCCCEECCCCCCCCCCCCCCHHHHHCCCCHHCCCCHHHHHHHHHHHHHHH
LLPIYIGFLVKRLEKKGVNIPDDYVVQDNKK
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKIKATIERIPGGMMVVPLLLAATINTIAPDLLRIGNFTQALFVDGASTLIALFLLFTGA
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHCCC
QINLRNVGVSLGKGATLLATKWFAGALVGLIAFMMMGDNGLWLGLAPIAIIAAMTNSNGG
EEEEHHCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHCCCCCC
LYVALVGQYGDKTDRAAYSLLALNDGPFLTMIALSIFGAMGFVEGMFSFVSFISVLLPIV
EEEEEEECCCCCHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGMVLGNLDEDLRSFFSTGSSVLIPFFAFALGMGIDFSSIIEGGLGGIILGLLTVFFTGT
HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHH
VGYFVFKAMKWNPIVGAAEGSTAGNAVATPAAIAAASPAFAANVELATVQVAAAVVTTAI
HHHHHHHHHCCCCCEECCCCCCCCCCCCCCHHHHHCCCCHHCCCCHHHHHHHHHHHHHHH
LLPIYIGFLVKRLEKKGVNIPDDYVVQDNKK
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; 2-dehydro-3-deoxy-D-gluconate [Periplasm] [C]

Specific reaction: Proton [Periplasm] + 2-dehydro-3-deoxy-D-gluconate [Periplasm] = Proton [Cytoplasm] + 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]