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The map label for this gene is yvoA [H]

Identifier: 23098067

GI number: 23098067

Start: 640434

End: 641180

Strand: Direct

Name: yvoA [H]

Synonym: OB0612

Alternate gene names: 23098067

Gene position: 640434-641180 (Clockwise)

Preceding gene: 28563910

Following gene: 23098068

Centisome position: 17.64

GC content: 34.27

Gene sequence:

>747_bases
ATGATTGATAAAAATTCACCTATACCAATTTATTACCAATTAGAAGAATATATAAAACATCAAATTGATAATCAAAAGTG
GCTGCCGGGAGAGCTTCTTCCATCTGAAAGAGAATTTGCAGAACAATATCATATCAGCCGTATGACAGTCCGCCAGGCTA
TAAATAATTTAGCTGCTGCTGGCCTTCTGTATCGTGTGAAAGGGAAAGGAACCTTTATTGCTCAACCTAAATTTGAACAT
GACCTTTCTGGTTTAACGAGTTTTACAGAAGATATGATGCAACGAGGCTTAACGCCGTCTAATCAATTGTTATATATTCA
ACTGCATAATCAACCGAGTCAAATTGCGCATAAGCTTCAATTACAATCAGAGGATTCTTACTATGAAATTAAACGAATAC
GCTTTGCAGATGAAGACCCCCTTGCATTTGAAATTATTTACACCCCGAAAAAACTAATTGGTGAACTGGAAGAAAAATAT
TTACAAGGTTCTTTTTATCAATATGTTGAACAAAAAATAGGAAAGCACATTATTGTTGGAAATCAAACAATTGAAGGTGC
TCTTGCAACTAAAGAACAAGCTAATTTCTTACAAATTAATGTCGGTGATCCGGTATTAATTATGGAAAGAGTAAGTTATC
TAGATCAACCGATAGAAGTTCCTATTGAATTTACTCAAACGATATATCGTGCAGATAAATATAAATTTCACCTCACGCTT
CATAGAGATGAACAAACCAAGGGCTAA

Upstream 100 bases:

>100_bases
CTGCTAAAAAGGGACCGTCTGCATTAAAATCAAAAAGCGCAACTTTAGGATTTCATTCAAGATACCTTATTAAAGTTGAA
TCCATTAAAGGAGTATTAAA

Downstream 100 bases:

>100_bases
TTTAGTTGAGCCTTTGGTTTTTTATATTGGCTCTCGTATTTCTAGTTGATGTACACTAACAACGAAATTTTACAACTGGA
ACATAAAAATTCCCTGAATT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MIDKNSPIPIYYQLEEYIKHQIDNQKWLPGELLPSEREFAEQYHISRMTVRQAINNLAAAGLLYRVKGKGTFIAQPKFEH
DLSGLTSFTEDMMQRGLTPSNQLLYIQLHNQPSQIAHKLQLQSEDSYYEIKRIRFADEDPLAFEIIYTPKKLIGELEEKY
LQGSFYQYVEQKIGKHIIVGNQTIEGALATKEQANFLQINVGDPVLIMERVSYLDQPIEVPIEFTQTIYRADKYKFHLTL
HRDEQTKG

Sequences:

>Translated_248_residues
MIDKNSPIPIYYQLEEYIKHQIDNQKWLPGELLPSEREFAEQYHISRMTVRQAINNLAAAGLLYRVKGKGTFIAQPKFEH
DLSGLTSFTEDMMQRGLTPSNQLLYIQLHNQPSQIAHKLQLQSEDSYYEIKRIRFADEDPLAFEIIYTPKKLIGELEEKY
LQGSFYQYVEQKIGKHIIVGNQTIEGALATKEQANFLQINVGDPVLIMERVSYLDQPIEVPIEFTQTIYRADKYKFHLTL
HRDEQTKG
>Mature_248_residues
MIDKNSPIPIYYQLEEYIKHQIDNQKWLPGELLPSEREFAEQYHISRMTVRQAINNLAAAGLLYRVKGKGTFIAQPKFEH
DLSGLTSFTEDMMQRGLTPSNQLLYIQLHNQPSQIAHKLQLQSEDSYYEIKRIRFADEDPLAFEIIYTPKKLIGELEEKY
LQGSFYQYVEQKIGKHIIVGNQTIEGALATKEQANFLQINVGDPVLIMERVSYLDQPIEVPIEFTQTIYRADKYKFHLTL
HRDEQTKG

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790118, Length=206, Percent_Identity=31.5533980582524, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1786950, Length=237, Percent_Identity=27.8481012658228, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI87082252, Length=205, Percent_Identity=27.3170731707317, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1788418, Length=230, Percent_Identity=27.3913043478261, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1790540, Length=212, Percent_Identity=20.7547169811321, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28910; Mature: 28910

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDKNSPIPIYYQLEEYIKHQIDNQKWLPGELLPSEREFAEQYHISRMTVRQAINNLAAA
CCCCCCCCEEEEEHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GLLYRVKGKGTFIAQPKFEHDLSGLTSFTEDMMQRGLTPSNQLLYIQLHNQPSQIAHKLQ
CEEEEEECCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHH
LQSEDSYYEIKRIRFADEDPLAFEIIYTPKKLIGELEEKYLQGSFYQYVEQKIGKHIIVG
CCCCCCEEEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEC
NQTIEGALATKEQANFLQINVGDPVLIMERVSYLDQPIEVPIEFTQTIYRADKYKFHLTL
CCEECCHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEEE
HRDEQTKG
ECCCCCCC
>Mature Secondary Structure
MIDKNSPIPIYYQLEEYIKHQIDNQKWLPGELLPSEREFAEQYHISRMTVRQAINNLAAA
CCCCCCCCEEEEEHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GLLYRVKGKGTFIAQPKFEHDLSGLTSFTEDMMQRGLTPSNQLLYIQLHNQPSQIAHKLQ
CEEEEEECCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHH
LQSEDSYYEIKRIRFADEDPLAFEIIYTPKKLIGELEEKYLQGSFYQYVEQKIGKHIIVG
CCCCCCEEEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEC
NQTIEGALATKEQANFLQINVGDPVLIMERVSYLDQPIEVPIEFTQTIYRADKYKFHLTL
CCEECCHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEEE
HRDEQTKG
ECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]