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The map label for this gene is ytcD [H]

Identifier: 23097809

GI number: 23097809

Start: 373655

End: 374005

Strand: Reverse

Name: ytcD [H]

Synonym: OB0354

Alternate gene names: 23097809

Gene position: 374005-373655 (Counterclockwise)

Preceding gene: 28563905

Following gene: 23097805

Centisome position: 10.3

GC content: 36.75

Gene sequence:

>351_bases
ATGAACATTGATGCGAATCATTGTAGTGTAGAGGATGCCTTAGGTATACTGGTTGGAAAATGGAAGCCAATTATTCTATT
ACATTTAATGGAAAAAGGAACCGTTCGTTTTAGTGATCTTAAACGTAGTATTCCAGGAATCACACAAAAAATGCTTACAA
AACAACTACGAGAGTTAGAAAATGAGGAGATCATTAATCGCGTCGTCTATCCTGAAGTTCCTCCCCGTGTTGAATATTCG
ATAAGCGAATATGGAAGAACCTTAGAAGATTTGCTTCATGCAATGCATGAATGGGGACAAGCACACACTATTCGTAAACA
GCAGAAACTTCAAGAAGATACAACAAAATAA

Upstream 100 bases:

>100_bases
AATGCTATTATGAATGATATAGTGTTATTTTAGAAGTACGCACCTAGAAGAAACATAGTTTCCTTAAAGATACTATTGTT
CATATGAAAGGGATGAGCAG

Downstream 100 bases:

>100_bases
ACCTCCAATCCATGCGTTCTTCTCATAGATACGGAGGTTCTTTGTTATTTCGTTAACACCATTGATTGAAAACTTAGCTC
TTGCTCTCCACCAATTATAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MNIDANHCSVEDALGILVGKWKPIILLHLMEKGTVRFSDLKRSIPGITQKMLTKQLRELENEEIINRVVYPEVPPRVEYS
ISEYGRTLEDLLHAMHEWGQAHTIRKQQKLQEDTTK

Sequences:

>Translated_116_residues
MNIDANHCSVEDALGILVGKWKPIILLHLMEKGTVRFSDLKRSIPGITQKMLTKQLRELENEEIINRVVYPEVPPRVEYS
ISEYGRTLEDLLHAMHEWGQAHTIRKQQKLQEDTTK
>Mature_116_residues
MNIDANHCSVEDALGILVGKWKPIILLHLMEKGTVRFSDLKRSIPGITQKMLTKQLRELENEEIINRVVYPEVPPRVEYS
ISEYGRTLEDLLHAMHEWGQAHTIRKQQKLQEDTTK

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=97, Percent_Identity=40.2061855670103, Blast_Score=84, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 13490; Mature: 13490

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIDANHCSVEDALGILVGKWKPIILLHLMEKGTVRFSDLKRSIPGITQKMLTKQLRELE
CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHH
NEEIINRVVYPEVPPRVEYSISEYGRTLEDLLHAMHEWGQAHTIRKQQKLQEDTTK
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNIDANHCSVEDALGILVGKWKPIILLHLMEKGTVRFSDLKRSIPGITQKMLTKQLRELE
CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHH
NEEIINRVVYPEVPPRVEYSISEYGRTLEDLLHAMHEWGQAHTIRKQQKLQEDTTK
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]