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The map label for this gene is pdaB [H]

Identifier: 23097654

GI number: 23097654

Start: 212749

End: 213504

Strand: Reverse

Name: pdaB [H]

Synonym: OB0199

Alternate gene names: 23097654

Gene position: 213504-212749 (Counterclockwise)

Preceding gene: 23097660

Following gene: 23097652

Centisome position: 5.88

GC content: 35.32

Gene sequence:

>756_bases
ATGGATCACTTTTATTCCTTTCGTTTAAGAGGAAAAAGAACTGCATGGATTATTGGATTAGCATTTATAGTTGCTCTTAT
AGCTTGGACACAAAAAGATGCAGTCTTCTCCGTATTTAATGGCGAAGAACCTGTTGCTTTGTCAAAAGGCAATGCTGATG
AACCAGACATTGCTATTACTTTCAATATTAGCTGGGGTGAAGAAAGAGTAGAAGAAATATTAAAGCAATTAGAAAATGAA
GATGTACAAGCTACATTCTTCATCAGTGGAGAATGGGCAGAAAGACACCCAGACCTTCTAAAAGCAATTTCAGACGGAGA
GCATGAAATAGGAATGCTAGGTTATCGCTACAAAAGCTATTTAGATCAAGAAGTTGAGCAAGTTAAAAAAGATCTTTTGT
ATGCTCAGGAAGCATTTGAAAAATTAGGATATGAAAACGTAAATTTATTGCGAACTCCTCATGGTCATTTTAACGAAGAG
ATTATCGAACTTGCTGAAAGCTTAGGTTTCCATGTTGTTCATTGGAATGTAAATCCTAATGACTGGGAGAATCCTGGTAC
AGAAGTAATCGTAGACTACATCATGAAAGAAACGGATAATGGTGATATCGTTCTATTACATGCTTCAGATAGTGCAAAAC
AAACTGCCGGTGCATTAGAAACTATTCTTCCAGGATTAAAAAACAAAGGATATGAACCTGTGACCATTTCAGAAATCATT
AATCAAGCAAAAGCAAATACAGAAATTGTTGATTAA

Upstream 100 bases:

>100_bases
CATCATTTTCCTAAACAGTTTTCGACAAAGCACGCTTGTACATATTTTCTATATCTAATGCATAGATATGAATATAGATA
TAAGTAGAGGAGGAAAACGG

Downstream 100 bases:

>100_bases
AAAAAGATCTCTTTCCAATACTGGGAAGAGATCTTTTTTATTACTTTTTCTTTTTTTGTTTAGCTTCTTGAACTGGCGTT
TTTTCTTGAAAATTTAAACG

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MDHFYSFRLRGKRTAWIIGLAFIVALIAWTQKDAVFSVFNGEEPVALSKGNADEPDIAITFNISWGEERVEEILKQLENE
DVQATFFISGEWAERHPDLLKAISDGEHEIGMLGYRYKSYLDQEVEQVKKDLLYAQEAFEKLGYENVNLLRTPHGHFNEE
IIELAESLGFHVVHWNVNPNDWENPGTEVIVDYIMKETDNGDIVLLHASDSAKQTAGALETILPGLKNKGYEPVTISEII
NQAKANTEIVD

Sequences:

>Translated_251_residues
MDHFYSFRLRGKRTAWIIGLAFIVALIAWTQKDAVFSVFNGEEPVALSKGNADEPDIAITFNISWGEERVEEILKQLENE
DVQATFFISGEWAERHPDLLKAISDGEHEIGMLGYRYKSYLDQEVEQVKKDLLYAQEAFEKLGYENVNLLRTPHGHFNEE
IIELAESLGFHVVHWNVNPNDWENPGTEVIVDYIMKETDNGDIVLLHASDSAKQTAGALETILPGLKNKGYEPVTISEII
NQAKANTEIVD
>Mature_251_residues
MDHFYSFRLRGKRTAWIIGLAFIVALIAWTQKDAVFSVFNGEEPVALSKGNADEPDIAITFNISWGEERVEEILKQLENE
DVQATFFISGEWAERHPDLLKAISDGEHEIGMLGYRYKSYLDQEVEQVKKDLLYAQEAFEKLGYENVNLLRTPHGHFNEE
IIELAESLGFHVVHWNVNPNDWENPGTEVIVDYIMKETDNGDIVLLHASDSAKQTAGALETILPGLKNKGYEPVTISEII
NQAKANTEIVD

Specific function: Necessary to maintain spores after the late stage of sporulation. Might be involved in cortex formation [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Forespore. Note=Produced in the mother cell compartment and transported into the forespore [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509
- InterPro:   IPR014132 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 28435; Mature: 28435

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHFYSFRLRGKRTAWIIGLAFIVALIAWTQKDAVFSVFNGEEPVALSKGNADEPDIAIT
CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCCCCCCCEEEE
FNISWGEERVEEILKQLENEDVQATFFISGEWAERHPDLLKAISDGEHEIGMLGYRYKSY
EEECCCHHHHHHHHHHHCCCCCEEEEEEECCHHHHCHHHHHHHCCCCCHHHHHHHHHHHH
LDQEVEQVKKDLLYAQEAFEKLGYENVNLLRTPHGHFNEEIIELAESLGFHVVHWNVNPN
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCEEEEEEECCCC
DWENPGTEVIVDYIMKETDNGDIVLLHASDSAKQTAGALETILPGLKNKGYEPVTISEII
CCCCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHH
NQAKANTEIVD
HHHHCCCCCCC
>Mature Secondary Structure
MDHFYSFRLRGKRTAWIIGLAFIVALIAWTQKDAVFSVFNGEEPVALSKGNADEPDIAIT
CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCCCCCCCEEEE
FNISWGEERVEEILKQLENEDVQATFFISGEWAERHPDLLKAISDGEHEIGMLGYRYKSY
EEECCCHHHHHHHHHHHCCCCCEEEEEEECCHHHHCHHHHHHHCCCCCHHHHHHHHHHHH
LDQEVEQVKKDLLYAQEAFEKLGYENVNLLRTPHGHFNEEIIELAESLGFHVVHWNVNPN
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCEEEEEEECCCC
DWENPGTEVIVDYIMKETDNGDIVLLHASDSAKQTAGALETILPGLKNKGYEPVTISEII
CCCCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHH
NQAKANTEIVD
HHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969501; 9384377; 8576055 [H]