| Definition | Yersinia pestis KIM 10 chromosome, complete genome. |
|---|---|
| Accession | NC_004088 |
| Length | 4,600,755 |
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The map label for this gene is rafA [H]
Identifier: 22126463
GI number: 22126463
Start: 2843886
End: 2846066
Strand: Direct
Name: rafA [H]
Synonym: y2582
Alternate gene names: 22126463
Gene position: 2843886-2846066 (Clockwise)
Preceding gene: 22126462
Following gene: 22126466
Centisome position: 61.81
GC content: 50.76
Gene sequence:
>2181_bases GTGTCGCCGCCATGCCATCACCTCGAGCAAATTTTCGTTTTCACAGGAGCCATTATGAATACTACCTTTGTCAGATTATC CAGCCGTTCTTCTGACATGATCGTGCGCTGCTCTCCCTACGCAGAAATTGTTTACTGGGGTAAGCCTCTGCTTGATTACT CGCCTGCGATGATGGAAGCCTTAAACCGCCCGGTCGCTAACAGCCGCCTGGACAGCGATATACCGTTGACGCTCTGCCCT GAAAATGGCCGAGGGCTGTTCAGCGTGCCCGGTATGGAGGGAAACCGTGATGGCGAAGATTGGTCTCCCATTTTCACCAG CCAGAGCCATACACTTGAAAACAATTTATTAACGATTATTAGCGAAGATACGAGCGCGGGCTTGCGGCTGGTGAGTGAGT TGCAGATGTGCCCAGACAGTGGCGTGATAAAAACCCGCAATACGCTGACCAATATTAAAGCCGGATGCTACCGAATCGAT CGGTTGGCCGTGACCTTGCCTTTTCCGGAACGTGCCAATGAAATCATGGCCTTCAATGGCCGTTGGATTAAAGAGTTCCA GCGCCACTCACTTAAACTCGATCATGGCGGTTATATTCAGGAAAATCGGCGCGGCAGAACCTCACATGAATATTTTCCCG GCATGGTAGTAGGGAAAGCAGGCTTCAGTGAGCAACAGGGCGAGGTCTGGGGCTTGCATCTGGCCTGGAGTGGAAACCAT CGTTTACGCGCTGACTGTAAAAGTGATGGCCGCCGTCAGGTGCAGGCCGAAGCCCTCTATTTTTCCGGTGAAATCGTTCT GGAACACTTGCAAAGTGTCAGTACCCCGTGGGTCTACGCGACCTATTCCGCTACCGGGTTGAACGGTATGAGCCACAGTT TTCATCACTATGTGCGCCAGAATATCGTGCCATCACTGGCAGAAAAACCGCGCCCGGTGCACCTCAATACTTGGGAAGGC ATCTATTTTAAGCATGACCCAGACTACATTATTCAGATGGTGAAAAACGCGGCCAAAATTGGTGTGGAGCGCTTTATCAT TGATGATGGCTGGTTCAAAGGACGCAACAACGATTTAAGTTCACTGGGCGATTGGTATATTGATGCCGAAAAATACCCAC AGGGGCTGAACCCCATTATTGAAGCAGTGAATGAATACGGTATGGAGTTTGGTATCTGGGTGGAGCCTGAAATGATCAAT CAGGATTCTGATTTATACCGTAATCATCCTGACTGGGTGCTGAAACTTGACGGCTACCCGCTACTGAAAGGACGCGACCA ACTGTTGCTCGATTTGTCGAACCCGGCCGTTTTCGACTACCTGCTAGAACGCTTGAGCTGGTTGTTGGGCGAACACAAAG TTGACTATGTTAAATGGGATTTCAACCGCGAGATGGTCCAGCCCGGTCACCGCGGCCACCCTTCGTTGGTACAACAGACC GAGCAACTGTATCGCTTATTCGACCAACTCAACCTGCATTTCCCACATATTGAATTTGAATCCTGCGCGTCAGGCGGGGG GCGTATTGATTATGAAATTCTGCAACGCTGCCACCGTTTCTGGCCATCAGACAGCAACGACGCTCTTGATCGCCAGCAAA TTCAGCGAGGGATGAGCTACTTCTTCCCTCCAGAAGTTATGGGCGCGCATATTGGCGGTACTCCGTGCCATACCACCGCC AGAATGCACTCTATTAATTTTCGGGGGCTGACAGCGCTGTTCGGCCATATGGGGGTCGAGCTTGATCCGGTGAGTGAATC TCCTGCCGAGCAACAGGCTTTTGCCCGTTATATTGCGCTACATAAACAACTGCGGCCGCTGTTACATAGCGGAAACACGA TCCGGCTCGACCATCCGGATAAAACAACATTAATTAATGCCGTTATCGCACACGACCAGCAGCAAGCTGTCGTCCTGATC AGCCAGCTAGCACTACCGGAATATGCCTTATGTGGCAACGTATTGATTCCTGGTCTTAACCCATCCACACACTATCAGAT CGAGGTTCTGGACATGCCTGACAGCATGCACAAACCACGAAATAACACCATGAAGCGCTATCCAGCCTGGTTGAAAAGCC CGCTCATCGTCAGTGGCGATTGGCTAGAGAAAGCAGGAATTGCCCTTCCCATCCTCAATCCTGAATCGGCTATCCTGATA CAGCTTTCAGCCGTAAATTAA
Upstream 100 bases:
>100_bases GCGCGGTAGCAAACCTGGCGTCAAGGCTAAAAGAGGATCCGTCGGTTACCCCTCCAGTTTCTCAGCCACAATCTTAAAAA ATTCAATACAGATAACGAGG
Downstream 100 bases:
>100_bases CCTCAGGCCGCCGTTTATGGCGGCCTACTTTGCGTCCAATGGGCTATTTGGTCTTCACGTTGTTGAGCAAGACCGCACTT ATCTATTTGGGTTATACCCA
Product: alpha-galactosidase
Products: NA
Alternate protein names: Melibiase [H]
Number of amino acids: Translated: 726; Mature: 725
Protein sequence:
>726_residues MSPPCHHLEQIFVFTGAIMNTTFVRLSSRSSDMIVRCSPYAEIVYWGKPLLDYSPAMMEALNRPVANSRLDSDIPLTLCP ENGRGLFSVPGMEGNRDGEDWSPIFTSQSHTLENNLLTIISEDTSAGLRLVSELQMCPDSGVIKTRNTLTNIKAGCYRID RLAVTLPFPERANEIMAFNGRWIKEFQRHSLKLDHGGYIQENRRGRTSHEYFPGMVVGKAGFSEQQGEVWGLHLAWSGNH RLRADCKSDGRRQVQAEALYFSGEIVLEHLQSVSTPWVYATYSATGLNGMSHSFHHYVRQNIVPSLAEKPRPVHLNTWEG IYFKHDPDYIIQMVKNAAKIGVERFIIDDGWFKGRNNDLSSLGDWYIDAEKYPQGLNPIIEAVNEYGMEFGIWVEPEMIN QDSDLYRNHPDWVLKLDGYPLLKGRDQLLLDLSNPAVFDYLLERLSWLLGEHKVDYVKWDFNREMVQPGHRGHPSLVQQT EQLYRLFDQLNLHFPHIEFESCASGGGRIDYEILQRCHRFWPSDSNDALDRQQIQRGMSYFFPPEVMGAHIGGTPCHTTA RMHSINFRGLTALFGHMGVELDPVSESPAEQQAFARYIALHKQLRPLLHSGNTIRLDHPDKTTLINAVIAHDQQQAVVLI SQLALPEYALCGNVLIPGLNPSTHYQIEVLDMPDSMHKPRNNTMKRYPAWLKSPLIVSGDWLEKAGIALPILNPESAILI QLSAVN
Sequences:
>Translated_726_residues MSPPCHHLEQIFVFTGAIMNTTFVRLSSRSSDMIVRCSPYAEIVYWGKPLLDYSPAMMEALNRPVANSRLDSDIPLTLCP ENGRGLFSVPGMEGNRDGEDWSPIFTSQSHTLENNLLTIISEDTSAGLRLVSELQMCPDSGVIKTRNTLTNIKAGCYRID RLAVTLPFPERANEIMAFNGRWIKEFQRHSLKLDHGGYIQENRRGRTSHEYFPGMVVGKAGFSEQQGEVWGLHLAWSGNH RLRADCKSDGRRQVQAEALYFSGEIVLEHLQSVSTPWVYATYSATGLNGMSHSFHHYVRQNIVPSLAEKPRPVHLNTWEG IYFKHDPDYIIQMVKNAAKIGVERFIIDDGWFKGRNNDLSSLGDWYIDAEKYPQGLNPIIEAVNEYGMEFGIWVEPEMIN QDSDLYRNHPDWVLKLDGYPLLKGRDQLLLDLSNPAVFDYLLERLSWLLGEHKVDYVKWDFNREMVQPGHRGHPSLVQQT EQLYRLFDQLNLHFPHIEFESCASGGGRIDYEILQRCHRFWPSDSNDALDRQQIQRGMSYFFPPEVMGAHIGGTPCHTTA RMHSINFRGLTALFGHMGVELDPVSESPAEQQAFARYIALHKQLRPLLHSGNTIRLDHPDKTTLINAVIAHDQQQAVVLI SQLALPEYALCGNVLIPGLNPSTHYQIEVLDMPDSMHKPRNNTMKRYPAWLKSPLIVSGDWLEKAGIALPILNPESAILI QLSAVN >Mature_725_residues SPPCHHLEQIFVFTGAIMNTTFVRLSSRSSDMIVRCSPYAEIVYWGKPLLDYSPAMMEALNRPVANSRLDSDIPLTLCPE NGRGLFSVPGMEGNRDGEDWSPIFTSQSHTLENNLLTIISEDTSAGLRLVSELQMCPDSGVIKTRNTLTNIKAGCYRIDR LAVTLPFPERANEIMAFNGRWIKEFQRHSLKLDHGGYIQENRRGRTSHEYFPGMVVGKAGFSEQQGEVWGLHLAWSGNHR LRADCKSDGRRQVQAEALYFSGEIVLEHLQSVSTPWVYATYSATGLNGMSHSFHHYVRQNIVPSLAEKPRPVHLNTWEGI YFKHDPDYIIQMVKNAAKIGVERFIIDDGWFKGRNNDLSSLGDWYIDAEKYPQGLNPIIEAVNEYGMEFGIWVEPEMINQ DSDLYRNHPDWVLKLDGYPLLKGRDQLLLDLSNPAVFDYLLERLSWLLGEHKVDYVKWDFNREMVQPGHRGHPSLVQQTE QLYRLFDQLNLHFPHIEFESCASGGGRIDYEILQRCHRFWPSDSNDALDRQQIQRGMSYFFPPEVMGAHIGGTPCHTTAR MHSINFRGLTALFGHMGVELDPVSESPAEQQAFARYIALHKQLRPLLHSGNTIRLDHPDKTTLINAVIAHDQQQAVVLIS QLALPEYALCGNVLIPGLNPSTHYQIEVLDMPDSMHKPRNNTMKRYPAWLKSPLIVSGDWLEKAGIALPILNPESAILIQ LSAVN
Specific function: Unknown
COG id: COG3345
COG function: function code G; Alpha-galactosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 36 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR002252 - InterPro: IPR017853 - InterPro: IPR000111 [H]
Pfam domain/function: PF02065 Melibiase [H]
EC number: =3.2.1.22 [H]
Molecular weight: Translated: 82460; Mature: 82329
Theoretical pI: Translated: 6.43; Mature: 6.43
Prosite motif: PS00512 ALPHA_GALACTOSIDASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPPCHHLEQIFVFTGAIMNTTFVRLSSRSSDMIVRCSPYAEIVYWGKPLLDYSPAMMEA CCCCHHHHHHHHHHHHHHHHCEEEEEECCCCCEEEEECCCEEEEECCCCHHCCCHHHHHH LNRPVANSRLDSDIPLTLCPENGRGLFSVPGMEGNRDGEDWSPIFTSQSHTLENNLLTII HCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCCCCCCCEECCCCCCCCCCEEEEE SEDTSAGLRLVSELQMCPDSGVIKTRNTLTNIKAGCYRIDRLAVTLPFPERANEIMAFNG ECCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHEEEEEEEEEECCCHHCCCEEEECC RWIKEFQRHSLKLDHGGYIQENRRGRTSHEYFPGMVVGKAGFSEQQGEVWGLHLAWSGNH HHHHHHHHCCEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCCC RLRADCKSDGRRQVQAEALYFSGEIVLEHLQSVSTPWVYATYSATGLNGMSHSFHHYVRQ EEECCCCCCCHHEEEEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHH NIVPSLAEKPRPVHLNTWEGIYFKHDPDYIIQMVKNAAKIGVERFIIDDGWFKGRNNDLS HCCHHHHCCCCCEEEECCCCEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHH SLGDWYIDAEKYPQGLNPIIEAVNEYGMEFGIWVEPEMINQDSDLYRNHPDWVLKLDGYP HHCCEEEEHHHCCCCCHHHHHHHHHCCCEEEEEECHHHCCCCCHHHCCCCCEEEEECCEE LLKGRDQLLLDLSNPAVFDYLLERLSWLLGEHKVDYVKWDFNREMVQPGHRGHPSLVQQT EECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHCCCCCCCHHHHHHH EQLYRLFDQLNLHFPHIEFESCASGGGRIDYEILQRCHRFWPSDSNDALDRQQIQRGMSY HHHHHHHHHCCCCCCCCCHHHHCCCCCEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH FFPPEVMGAHIGGTPCHTTARMHSINFRGLTALFGHMGVELDPVSESPAEQQAFARYIAL CCCHHHHCCCCCCCCCCCHHHEEECCCCHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHH HKQLRPLLHSGNTIRLDHPDKTTLINAVIAHDQQQAVVLISQLALPEYALCGNVLIPGLN HHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHCCCEEECCCC PSTHYQIEVLDMPDSMHKPRNNTMKRYPAWLKSPLIVSGDWLEKAGIALPILNPESAILI CCCEEEEEEEECCHHHCCCCCCCHHHHHHHHCCCEEEECCCHHHCCCEEEEECCCCEEEE QLSAVN EEEECC >Mature Secondary Structure SPPCHHLEQIFVFTGAIMNTTFVRLSSRSSDMIVRCSPYAEIVYWGKPLLDYSPAMMEA CCCHHHHHHHHHHHHHHHHCEEEEEECCCCCEEEEECCCEEEEECCCCHHCCCHHHHHH LNRPVANSRLDSDIPLTLCPENGRGLFSVPGMEGNRDGEDWSPIFTSQSHTLENNLLTII HCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCCCCCCCEECCCCCCCCCCEEEEE SEDTSAGLRLVSELQMCPDSGVIKTRNTLTNIKAGCYRIDRLAVTLPFPERANEIMAFNG ECCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHEEEEEEEEEECCCHHCCCEEEECC RWIKEFQRHSLKLDHGGYIQENRRGRTSHEYFPGMVVGKAGFSEQQGEVWGLHLAWSGNH HHHHHHHHCCEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCCC RLRADCKSDGRRQVQAEALYFSGEIVLEHLQSVSTPWVYATYSATGLNGMSHSFHHYVRQ EEECCCCCCCHHEEEEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHH NIVPSLAEKPRPVHLNTWEGIYFKHDPDYIIQMVKNAAKIGVERFIIDDGWFKGRNNDLS HCCHHHHCCCCCEEEECCCCEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHH SLGDWYIDAEKYPQGLNPIIEAVNEYGMEFGIWVEPEMINQDSDLYRNHPDWVLKLDGYP HHCCEEEEHHHCCCCCHHHHHHHHHCCCEEEEEECHHHCCCCCHHHCCCCCEEEEECCEE LLKGRDQLLLDLSNPAVFDYLLERLSWLLGEHKVDYVKWDFNREMVQPGHRGHPSLVQQT EECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHCCCCCCCHHHHHHH EQLYRLFDQLNLHFPHIEFESCASGGGRIDYEILQRCHRFWPSDSNDALDRQQIQRGMSY HHHHHHHHHCCCCCCCCCHHHHCCCCCEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH FFPPEVMGAHIGGTPCHTTARMHSINFRGLTALFGHMGVELDPVSESPAEQQAFARYIAL CCCHHHHCCCCCCCCCCCHHHEEECCCCHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHH HKQLRPLLHSGNTIRLDHPDKTTLINAVIAHDQQQAVVLISQLALPEYALCGNVLIPGLN HHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHCCCEEECCCC PSTHYQIEVLDMPDSMHKPRNNTMKRYPAWLKSPLIVSGDWLEKAGIALPILNPESAILI CCCEEEEEEEECCHHHCCCCCCCHHHHHHHHCCCEEEECCCHHHCCCEEEEECCCCEEEE QLSAVN EEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2556373; 2180920; 786627 [H]