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The map label for this gene is ompW [H]

Identifier: 22125935

GI number: 22125935

Start: 2252208

End: 2252855

Strand: Direct

Name: ompW [H]

Synonym: y2044

Alternate gene names: 22125935

Gene position: 2252208-2252855 (Clockwise)

Preceding gene: 22125934

Following gene: 22125942

Centisome position: 48.95

GC content: 46.14

Gene sequence:

>648_bases
ATGGAATGGATAATGAAAAAAATCACTTTGGCACTGCTCGCCGTGGCCTCGTTAGTACCTACAGCAGCAAGTGCACATGA
AGCTGGCGATTATATTTTCCGAGCAGGGACGGCAACCGTCAGACCTAATGCCGGGTCTGATGATGTGTTAGGTAACGGTT
CCTTCAAAGTCGATAACAATACCCAGTTGGGGCTGACCTTCAGTTACCTGATCACCGACAATATCGGTGTTGAATTGCTG
GCAGCAACGCCATTCAACCATAAAGTGGGGCTGGCAGGGGTAGGGACGATTGCGGATGTTAAACAACTGCCGCCAACATT
AATGGCGCAATACTATTTCCGTGATAAACAAGACAAATTGCGACCATACCTGGGTATTGGTCTGAACTACACCAAATTCT
TTGACGAAAAATTCAACGCGACAGGCTCAGATATCGGTCTGACGAATTTAAGTGTTAAAGATTCATGGGGTGTTGCAGGG
CAAGCTGGCATGGATTATATGGTCAGTGAAAACTGGATGCTGAACATGTCAGTCTGGTGGATGAACATTGAATCCGACGT
GAAATTTAATTTGGCAGGCGAAGAGCACAGCATCAATACCCGTTTGGCCCCATGGGTATTTATGTTTGGCGCAGGTTATC
GTTTTTAA

Upstream 100 bases:

>100_bases
ATAAAATAGGATTTATTTAAAAAGATACGAAAGATGTGATCTCGATTAGATCACAAATACTCATTTGTAGGTATATTCAC
CCCCGTAAATATACCTACAA

Downstream 100 bases:

>100_bases
TGACCCTTCGGGCTTAAAGCTGTAGCGAGTTAGCGACACTCACTGACAGGAATAAGCTCATTGGGATTGCCGACCTGCAG
CGCTAATGAGTTTACATCAG

Product: outer membrane protein W

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MEWIMKKITLALLAVASLVPTAASAHEAGDYIFRAGTATVRPNAGSDDVLGNGSFKVDNNTQLGLTFSYLITDNIGVELL
AATPFNHKVGLAGVGTIADVKQLPPTLMAQYYFRDKQDKLRPYLGIGLNYTKFFDEKFNATGSDIGLTNLSVKDSWGVAG
QAGMDYMVSENWMLNMSVWWMNIESDVKFNLAGEEHSINTRLAPWVFMFGAGYRF

Sequences:

>Translated_215_residues
MEWIMKKITLALLAVASLVPTAASAHEAGDYIFRAGTATVRPNAGSDDVLGNGSFKVDNNTQLGLTFSYLITDNIGVELL
AATPFNHKVGLAGVGTIADVKQLPPTLMAQYYFRDKQDKLRPYLGIGLNYTKFFDEKFNATGSDIGLTNLSVKDSWGVAG
QAGMDYMVSENWMLNMSVWWMNIESDVKFNLAGEEHSINTRLAPWVFMFGAGYRF
>Mature_215_residues
MEWIMKKITLALLAVASLVPTAASAHEAGDYIFRAGTATVRPNAGSDDVLGNGSFKVDNNTQLGLTFSYLITDNIGVELL
AATPFNHKVGLAGVGTIADVKQLPPTLMAQYYFRDKQDKLRPYLGIGLNYTKFFDEKFNATGSDIGLTNLSVKDSWGVAG
QAGMDYMVSENWMLNMSVWWMNIESDVKFNLAGEEHSINTRLAPWVFMFGAGYRF

Specific function: Acts as a receptor for colicin S4 [H]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=212, Percent_Identity=58.4905660377358, Blast_Score=266, Evalue=6e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 23682; Mature: 23682

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS00695 ENT_VIR_OMP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWIMKKITLALLAVASLVPTAASAHEAGDYIFRAGTATVRPNAGSDDVLGNGSFKVDNN
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCEEECCC
TQLGLTFSYLITDNIGVELLAATPFNHKVGLAGVGTIADVKQLPPTLMAQYYFRDKQDKL
CEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCHHHC
RPYLGIGLNYTKFFDEKFNATGSDIGLTNLSVKDSWGVAGQAGMDYMVSENWMLNMSVWW
CCEEECCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCEEECCCEEEEEEEEE
MNIESDVKFNLAGEEHSINTRLAPWVFMFGAGYRF
EEECCCEEEEECCCCCCCCCCHHHEEEEECCCCCC
>Mature Secondary Structure
MEWIMKKITLALLAVASLVPTAASAHEAGDYIFRAGTATVRPNAGSDDVLGNGSFKVDNN
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCEEECCC
TQLGLTFSYLITDNIGVELLAATPFNHKVGLAGVGTIADVKQLPPTLMAQYYFRDKQDKL
CEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCHHHC
RPYLGIGLNYTKFFDEKFNATGSDIGLTNLSVKDSWGVAGQAGMDYMVSENWMLNMSVWW
CCEEECCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCEEECCCEEEEEEEEE
MNIESDVKFNLAGEEHSINTRLAPWVFMFGAGYRF
EEECCCEEEEECCCCCCCCCCHHHEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3058546; 9097039; 9278503; 9629924; 10348872 [H]