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The map label for this gene is cspI [H]

Identifier: 22124143

GI number: 22124143

Start: 237428

End: 237736

Strand: Direct

Name: cspI [H]

Synonym: y0223

Alternate gene names: 22124143

Gene position: 237428-237736 (Clockwise)

Preceding gene: 22124141

Following gene: 22124144

Centisome position: 5.16

GC content: 43.69

Gene sequence:

>309_bases
GTGAGTCTCCTCCTAAGTGCCCAAGTAAGACATCCTCTGAAAGACAGACCACGTTCGCTACACTATTGTGGCAAAATAAT
TGAAGGAAATATCTCTATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTGACGCTGGTAAAGGTTTTGGTTTCATCA
CTCCGGCCGATGGCAGCAAAGATGTGTTCGTTCACTTCTCTGCTATCCAGAGCAATGATTTTAAAACCCTGGATGAAGGC
CAAAATGTGGAGTTCTCTATCGAGAACGGCGCTAAAGGCCCCTCAGCAGTAAACGTAATCGCCCTGTAA

Upstream 100 bases:

>100_bases
TGTGGTTAAATAGCTTCATCGGTTTGGAACACAGACCTTATGAAAGCAGTTTTAGTAAAGCAGTCCTCAGTTCAAGCGTT
ATCATAGATATCCCTTCTCC

Downstream 100 bases:

>100_bases
TTCAGTGTGATTCGAGGAGTTGGCAACCGACAGCGATGACGGGTTACCCCGAGCAGTGTTGCCAGCCCCCACGTAAAAAG
TTATACCCGGTTGACCGTAA

Product: cold shock-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 102; Mature: 101

Protein sequence:

>102_residues
MSLLLSAQVRHPLKDRPRSLHYCGKIIEGNISMSNKMTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSNDFKTLDEG
QNVEFSIENGAKGPSAVNVIAL

Sequences:

>Translated_102_residues
MSLLLSAQVRHPLKDRPRSLHYCGKIIEGNISMSNKMTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSNDFKTLDEG
QNVEFSIENGAKGPSAVNVIAL
>Mature_101_residues
SLLLSAQVRHPLKDRPRSLHYCGKIIEGNISMSNKMTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSNDFKTLDEGQ
NVEFSIENGAKGPSAVNVIAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=82.8571428571429, Blast_Score=120, Evalue=1e-29,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=77.1428571428572, Blast_Score=118, Evalue=7e-29,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=77.9411764705882, Blast_Score=113, Evalue=3e-27,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=74.2857142857143, Blast_Score=110, Evalue=1e-26,
Organism=Escherichia coli, GI1786841, Length=68, Percent_Identity=77.9411764705882, Blast_Score=108, Evalue=5e-26,
Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=76.1194029850746, Blast_Score=107, Evalue=1e-25,
Organism=Escherichia coli, GI2367112, Length=67, Percent_Identity=53.7313432835821, Blast_Score=72, Evalue=8e-15,
Organism=Escherichia coli, GI1787840, Length=67, Percent_Identity=52.2388059701493, Blast_Score=70, Evalue=2e-14,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=45.3125, Blast_Score=69, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=45.9016393442623, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 11098; Mature: 10967

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLLSAQVRHPLKDRPRSLHYCGKIIEGNISMSNKMTGLVKWFDAGKGFGFITPADGSK
CCEEECCCCCCCCCCCCCCCCCCCEEEECCEECCCCCEEEEEEEECCCCCEEEECCCCCC
DVFVHFSAIQSNDFKTLDEGQNVEFSIENGAKGPSAVNVIAL
EEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEC
>Mature Secondary Structure 
SLLLSAQVRHPLKDRPRSLHYCGKIIEGNISMSNKMTGLVKWFDAGKGFGFITPADGSK
CEEECCCCCCCCCCCCCCCCCCCEEEECCEECCCCCEEEEEEEECCCCCEEEECCCCCC
DVFVHFSAIQSNDFKTLDEGQNVEFSIENGAKGPSAVNVIAL
EEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA