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The map label for this gene is cspI [H]

Identifier: 22124144

GI number: 22124144

Start: 237921

End: 238208

Strand: Direct

Name: cspI [H]

Synonym: y0224

Alternate gene names: 22124144

Gene position: 237921-238208 (Clockwise)

Preceding gene: 22124143

Following gene: 22124146

Centisome position: 5.17

GC content: 44.1

Gene sequence:

>288_bases
GTGCCCCATAAGTTCTACCCAAGCCTATCTAGTCGCCTGTGGCGGCAATTAAAAATTATTGAAGGAAGTATCTCTATGTC
TAATAAAATGACTGGTTTAGTAAAATGGTTTGACGCTGGTAAAGGTTTTGGTTTCATCACTCCGGCTGATGGCAGCAAAG
ATGTGTTCGTTCACTTCTCTGCTATCCAGAGCAATGATTTCAAAACCCTGGATGAAGGCCAAAATGTGGAGTTCTCTATC
GAGAACGGCGCTAAAGGCCCTGCAGCGGTAAACGTTATTGCGCTGTAA

Upstream 100 bases:

>100_bases
ACCCGGTTGACCGTAACATTTATGTCCGCAGTTTTAGTAAAGCATTTCCCCGTATTAGCGTTATCAGACAGATACCTCTT
CTCCGTGAAATTCCTTCTAA

Downstream 100 bases:

>100_bases
CCGTCAATAATATCTCGGTGTGACTTTCAATCGCGATGAAGGCGATAGCCCAAAGCAATAAACTCATACCGAATAATAAA
TATCCTCCGGCATAGCCGGA

Product: cold shock-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 95; Mature: 94

Protein sequence:

>95_residues
MPHKFYPSLSSRLWRQLKIIEGSISMSNKMTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSI
ENGAKGPAAVNVIAL

Sequences:

>Translated_95_residues
MPHKFYPSLSSRLWRQLKIIEGSISMSNKMTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSI
ENGAKGPAAVNVIAL
>Mature_94_residues
PHKFYPSLSSRLWRQLKIIEGSISMSNKMTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSIE
NGAKGPAAVNVIAL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=84.2857142857143, Blast_Score=121, Evalue=1e-29,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=78.5714285714286, Blast_Score=119, Evalue=5e-29,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=79.4117647058823, Blast_Score=113, Evalue=2e-27,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=75.7142857142857, Blast_Score=111, Evalue=9e-27,
Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=77.6119402985075, Blast_Score=108, Evalue=9e-26,
Organism=Escherichia coli, GI1786841, Length=68, Percent_Identity=76.4705882352941, Blast_Score=107, Evalue=2e-25,
Organism=Escherichia coli, GI2367112, Length=67, Percent_Identity=53.7313432835821, Blast_Score=72, Evalue=7e-15,
Organism=Escherichia coli, GI1787840, Length=67, Percent_Identity=50.7462686567164, Blast_Score=70, Evalue=2e-14,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=45.3125, Blast_Score=69, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=45.9016393442623, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 10423; Mature: 10292

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHKFYPSLSSRLWRQLKIIEGSISMSNKMTGLVKWFDAGKGFGFITPADGSKDVFVHFS
CCCCCCCCHHHHHHHHHHEECCCCCCCCCCEEEEEEEECCCCCEEEECCCCCCEEEEEEE
AIQSNDFKTLDEGQNVEFSIENGAKGPAAVNVIAL
EECCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEC
>Mature Secondary Structure 
PHKFYPSLSSRLWRQLKIIEGSISMSNKMTGLVKWFDAGKGFGFITPADGSKDVFVHFS
CCCCCCCHHHHHHHHHHEECCCCCCCCCCEEEEEEEECCCCCEEEECCCCCCEEEEEEE
AIQSNDFKTLDEGQNVEFSIENGAKGPAAVNVIAL
EECCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA