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The map label for this gene is ydhC [H]

Identifier: 22124136

GI number: 22124136

Start: 231438

End: 232163

Strand: Reverse

Name: ydhC [H]

Synonym: y0216

Alternate gene names: 22124136

Gene position: 232163-231438 (Counterclockwise)

Preceding gene: 22124137

Following gene: 22124135

Centisome position: 5.05

GC content: 50.69

Gene sequence:

>726_bases
TTGTTTTGTATTACAGAGGCATGGTACAAAAAGCAACCATATTGTCGGACAGGAATACAATTAATGCTAGCGGGAATGGG
TGTGATTAAACCTGAGACCTTGCGCTATCAGGTTGAAAATGTACTGCGGCAAGCGATCATGTCAGGGCGTTTTACACCAG
GGGAGCGGCTGATTGAACGAGAACTGTGTGAAACCTTAGGCGTCAGCCGGACATCAATTCGTGAAGCTTTACGTAGGCTT
GAAGCTGAAAAACTGGTCTCCATTGTGCCGCACAAAGGCCCGATAGTGGCGATTATCTCCAGGCAAGAAGCTGCTGAGTT
ATTCGCCCTGCGCGGTCTCTTGGAGGGGTTCGCCGCCCGTGAATTTGCCCAACGGGCAACGGATGTAGCGATTGTGCATT
TCGCACAAGCTATTCAGGCGCTGCGCATGGCAGGCATGACAAAGGATCGGGCCAAGGTACTGAAGGCGAAAACAGATCTT
TATGACGTGTTGCTGGACAATTGTGGCAATGGGTTGGTGAAAGAGACCTTAACCAGCTTACATTCGCGGATTAACTTATT
GCGCGCGACTTCGCTAATGGATCCGCAGCGTTTACCTGTCAGCATTAATGAGATCGACGATCTGTATCAGGCGTTAAAAG
CGCGGGATCCCGATGCGGCAGAACGGCATGTCGCCAATGCAAAAGAAGTTGCTCTGCGGATCCTTGAGGAGACCAACGCG
ACGTAG

Upstream 100 bases:

>100_bases
GGATGATAGGTACGGTGGGGGCCATTATGGGGCCGGAAACTAAAGAGGTCGATTTTACCTCGTCAGCGGGCTAACGGGGT
GATTATCACCGGGTCTTTTC

Downstream 100 bases:

>100_bases
GCAATAAAGACATAGGCAATCCTTTTGCCGATACCTAACGGGAAAATCTATCCATAGCGGTCAGCATGAATACTGAAAAC
AAAAAACTTAGCACGTTAAT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MFCITEAWYKKQPYCRTGIQLMLAGMGVIKPETLRYQVENVLRQAIMSGRFTPGERLIERELCETLGVSRTSIREALRRL
EAEKLVSIVPHKGPIVAIISRQEAAELFALRGLLEGFAAREFAQRATDVAIVHFAQAIQALRMAGMTKDRAKVLKAKTDL
YDVLLDNCGNGLVKETLTSLHSRINLLRATSLMDPQRLPVSINEIDDLYQALKARDPDAAERHVANAKEVALRILEETNA
T

Sequences:

>Translated_241_residues
MFCITEAWYKKQPYCRTGIQLMLAGMGVIKPETLRYQVENVLRQAIMSGRFTPGERLIERELCETLGVSRTSIREALRRL
EAEKLVSIVPHKGPIVAIISRQEAAELFALRGLLEGFAAREFAQRATDVAIVHFAQAIQALRMAGMTKDRAKVLKAKTDL
YDVLLDNCGNGLVKETLTSLHSRINLLRATSLMDPQRLPVSINEIDDLYQALKARDPDAAERHVANAKEVALRILEETNA
T
>Mature_241_residues
MFCITEAWYKKQPYCRTGIQLMLAGMGVIKPETLRYQVENVLRQAIMSGRFTPGERLIERELCETLGVSRTSIREALRRL
EAEKLVSIVPHKGPIVAIISRQEAAELFALRGLLEGFAAREFAQRATDVAIVHFAQAIQALRMAGMTKDRAKVLKAKTDL
YDVLLDNCGNGLVKETLTSLHSRINLLRATSLMDPQRLPVSINEIDDLYQALKARDPDAAERHVANAKEVALRILEETNA
T

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994955, Length=206, Percent_Identity=26.6990291262136, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI87081914, Length=203, Percent_Identity=26.6009852216749, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787821, Length=207, Percent_Identity=25.1207729468599, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26985; Mature: 26985

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFCITEAWYKKQPYCRTGIQLMLAGMGVIKPETLRYQVENVLRQAIMSGRFTPGERLIER
CCCCCCHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
ELCETLGVSRTSIREALRRLEAEKLVSIVPHKGPIVAIISRQEAAELFALRGLLEGFAAR
HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHH
EFAQRATDVAIVHFAQAIQALRMAGMTKDRAKVLKAKTDLYDVLLDNCGNGLVKETLTSL
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
HSRINLLRATSLMDPQRLPVSINEIDDLYQALKARDPDAAERHVANAKEVALRILEETNA
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHCCC
T
C
>Mature Secondary Structure
MFCITEAWYKKQPYCRTGIQLMLAGMGVIKPETLRYQVENVLRQAIMSGRFTPGERLIER
CCCCCCHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
ELCETLGVSRTSIREALRRLEAEKLVSIVPHKGPIVAIISRQEAAELFALRGLLEGFAAR
HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHH
EFAQRATDVAIVHFAQAIQALRMAGMTKDRAKVLKAKTDLYDVLLDNCGNGLVKETLTSL
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
HSRINLLRATSLMDPQRLPVSINEIDDLYQALKARDPDAAERHVANAKEVALRILEETNA
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHCCC
T
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]