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The map label for this gene is msmR [H]

Identifier: 21909639

GI number: 21909639

Start: 123041

End: 124246

Strand: Reverse

Name: msmR [H]

Synonym: SpyM3_0103

Alternate gene names: 21909639

Gene position: 124246-123041 (Counterclockwise)

Preceding gene: 21909641

Following gene: 21909633

Centisome position: 6.54

GC content: 34.16

Gene sequence:

>1206_bases
ATGGTTAGATTCGATTTAAAACATGTGCAAACATTACACAGCTTGTCTCAATTACCTATTTCAGTGATGTCACAAGATAA
GGCACTTATTCAAGTATATGGTAATGACGACTATTTATTATGTTACTATCAATTTTTAAAGCATCTAGCTATTCCTCAAG
CCGCACAAGATGTTATTTTTTATGAGGGTTTATTTGAAGAGTCCTTTATGATTTTTCCTCTTTGTCACTACATTATTGCC
ATTGGACCTTTCTACCCTTATTCACTTAATAAAGACTATCAGGAACAATTAGCTAATAATTGTTTAAAACATTCTTCTCA
TCGTAGCAAAGAAGAGCTCTTATCCTATATGGCACTTGTCCCACATTTTCCAATTAATAATGTGCGGAACCTTTTGATAG
CTATTGACGCTTTTTTTGACACACAATTTGAGACGACTTGCCAACAAACAATTCATCAATTGTTGCAGCATTCAAAACAG
ATGACTGCTGATCCTGATATCATTCATCGCCTTAAGCATATTAGCAAAGCATCTAGCCAATTACCGCCTGTTTTAGAGCA
CCTAAATCATATTATGGATCTGGTAAAGCTAGGCAATCCACAATTGCTCAAGCAAGAAATCAATCGCATCCCCTTATCAA
GTATCACCTCATCTTCTATTTCTGCTCTAAGGGCGGAAAAGAACCTCACTGTTATCTATTTAACTAGGTTACTGGAATTC
AGTTTTGTAGAAAATACTGACGTAGCAAAGCATTATAGCCTTGTCAAATACTACATGGCCTTAAATGAAGAAGCGAGTGA
CTTGCTCAAAGTTTTGAGAATTCGCTGTGCAGCTATCATCCATTTTTCCGAATCATTAACCAATAAAAGTATTTCTGATA
AACGTCAAATGTACAATAGTGTGCTTCATTATGTCGATAGTCACCTGTATTCCAAATTAAAGGTATCTGATATCGCTAAA
CGCCTATATGTTTCCGAATCTCACTTACGTTCAGTCTTTAAAAAATACTCAAATGTTTCCTTACAACATTATATTCTAAG
TACAAAAATCAAAGAAGCTCAACTACTCTTAAAACGAGGAATTCCTGTTGGAGAAGTGGCTAAAAGCTTATATTTTTATG
ACACTACCCATTTTCATAAAATCTTTAAAAAATACACGGGTATTTCTTCAAAAGACTATCTTGCTAAATACCGAGATAAT
ATTTAA

Upstream 100 bases:

>100_bases
AGTGTGCCTACCAAATAGGAATTTTCATCATTAACATTTACTAAAGCTTTTACAAGTCTACGGAAAATGATACAACTAAG
GATGGGGGGCAATCTATCAA

Downstream 100 bases:

>100_bases
GAATTCAAGACACTCTTTTCATCAATCATTATCTTATATGGTACAAAAACCTATCAGCATAGAAAAACATCTCCAAAGTC
AAGCAAGACTATGGAGATGT

Product: putative multiple sugar metabolism regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MVRFDLKHVQTLHSLSQLPISVMSQDKALIQVYGNDDYLLCYYQFLKHLAIPQAAQDVIFYEGLFEESFMIFPLCHYIIA
IGPFYPYSLNKDYQEQLANNCLKHSSHRSKEELLSYMALVPHFPINNVRNLLIAIDAFFDTQFETTCQQTIHQLLQHSKQ
MTADPDIIHRLKHISKASSQLPPVLEHLNHIMDLVKLGNPQLLKQEINRIPLSSITSSSISALRAEKNLTVIYLTRLLEF
SFVENTDVAKHYSLVKYYMALNEEASDLLKVLRIRCAAIIHFSESLTNKSISDKRQMYNSVLHYVDSHLYSKLKVSDIAK
RLYVSESHLRSVFKKYSNVSLQHYILSTKIKEAQLLLKRGIPVGEVAKSLYFYDTTHFHKIFKKYTGISSKDYLAKYRDN
I

Sequences:

>Translated_401_residues
MVRFDLKHVQTLHSLSQLPISVMSQDKALIQVYGNDDYLLCYYQFLKHLAIPQAAQDVIFYEGLFEESFMIFPLCHYIIA
IGPFYPYSLNKDYQEQLANNCLKHSSHRSKEELLSYMALVPHFPINNVRNLLIAIDAFFDTQFETTCQQTIHQLLQHSKQ
MTADPDIIHRLKHISKASSQLPPVLEHLNHIMDLVKLGNPQLLKQEINRIPLSSITSSSISALRAEKNLTVIYLTRLLEF
SFVENTDVAKHYSLVKYYMALNEEASDLLKVLRIRCAAIIHFSESLTNKSISDKRQMYNSVLHYVDSHLYSKLKVSDIAK
RLYVSESHLRSVFKKYSNVSLQHYILSTKIKEAQLLLKRGIPVGEVAKSLYFYDTTHFHKIFKKYTGISSKDYLAKYRDN
I
>Mature_401_residues
MVRFDLKHVQTLHSLSQLPISVMSQDKALIQVYGNDDYLLCYYQFLKHLAIPQAAQDVIFYEGLFEESFMIFPLCHYIIA
IGPFYPYSLNKDYQEQLANNCLKHSSHRSKEELLSYMALVPHFPINNVRNLLIAIDAFFDTQFETTCQQTIHQLLQHSKQ
MTADPDIIHRLKHISKASSQLPPVLEHLNHIMDLVKLGNPQLLKQEINRIPLSSITSSSISALRAEKNLTVIYLTRLLEF
SFVENTDVAKHYSLVKYYMALNEEASDLLKVLRIRCAAIIHFSESLTNKSISDKRQMYNSVLHYVDSHLYSKLKVSDIAK
RLYVSESHLRSVFKKYSNVSLQHYILSTKIKEAQLLLKRGIPVGEVAKSLYFYDTTHFHKIFKKYTGISSKDYLAKYRDN
I

Specific function: Regulatory protein for the msm operon for multiple sugar metabolism. Activates the transcription of the msmEFGK, aga, dexB and gftA genes [H]

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 46518; Mature: 46518

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRFDLKHVQTLHSLSQLPISVMSQDKALIQVYGNDDYLLCYYQFLKHLAIPQAAQDVIF
CCCCHHHHHHHHHHHHHCCHHHHCCCCEEEEEECCCCEEEHHHHHHHHHCCCHHHHHHHH
YEGLFEESFMIFPLCHYIIAIGPFYPYSLNKDYQEQLANNCLKHSSHRSKEELLSYMALV
HHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
PHFPINNVRNLLIAIDAFFDTQFETTCQQTIHQLLQHSKQMTADPDIIHRLKHISKASSQ
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
LPPVLEHLNHIMDLVKLGNPQLLKQEINRIPLSSITSSSISALRAEKNLTVIYLTRLLEF
CCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
SFVENTDVAKHYSLVKYYMALNEEASDLLKVLRIRCAAIIHFSESLTNKSISDKRQMYNS
HHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
VLHYVDSHLYSKLKVSDIAKRLYVSESHLRSVFKKYSNVSLQHYILSTKIKEAQLLLKRG
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
IPVGEVAKSLYFYDTTHFHKIFKKYTGISSKDYLAKYRDNI
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MVRFDLKHVQTLHSLSQLPISVMSQDKALIQVYGNDDYLLCYYQFLKHLAIPQAAQDVIF
CCCCHHHHHHHHHHHHHCCHHHHCCCCEEEEEECCCCEEEHHHHHHHHHCCCHHHHHHHH
YEGLFEESFMIFPLCHYIIAIGPFYPYSLNKDYQEQLANNCLKHSSHRSKEELLSYMALV
HHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
PHFPINNVRNLLIAIDAFFDTQFETTCQQTIHQLLQHSKQMTADPDIIHRLKHISKASSQ
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
LPPVLEHLNHIMDLVKLGNPQLLKQEINRIPLSSITSSSISALRAEKNLTVIYLTRLLEF
CCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
SFVENTDVAKHYSLVKYYMALNEEASDLLKVLRIRCAAIIHFSESLTNKSISDKRQMYNS
HHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
VLHYVDSHLYSKLKVSDIAKRLYVSESHLRSVFKKYSNVSLQHYILSTKIKEAQLLLKRG
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
IPVGEVAKSLYFYDTTHFHKIFKKYTGISSKDYLAKYRDNI
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1537846; 12397186 [H]