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The map label for this gene is yqgF [C]

Identifier: 30410827

GI number: 30410827

Start: 585685

End: 586131

Strand: Direct

Name: yqgF [C]

Synonym: BUsg530

Alternate gene names: 30410827

Gene position: 585685-586131 (Clockwise)

Preceding gene: 21672792

Following gene: 21672794

Centisome position: 91.31

GC content: 22.82

Gene sequence:

>447_bases
TTGAAGATAAAATATATAAATAGAGATCAAAAAATGATAGTAATAGCTTTTGATTTTGGTTTAAAGAATATTGGAGTAGC
AGTCGGAGAAAATATCCTTAAAAAAGGCAGAGCTTTAAATAAATTATCTGCAAAAAACGGATCTCCAGATTGGAATAATA
TAAAAAATTTATTAAAAATATGGCAACCCAAATTTTTGGTTGTAGGACTACCATTAAATATAGATGGTACTAGGCAAGAT
ATAACGAAAAAAGCAGAAAAATTTGCTTTTTTATTAAAATATAAATTTAATATTTTTGTTTATTTACATGATGAACGTTT
AAGTACTAAAGAAGCTAAATCATTAATATTTAAGAAAAATGGTTTTAAAGTATTAAAAAAAGAAAAAATACATTCTGTTG
CTGCTGTAATTATATTAGAAAGTTGGTTTAATCAAAATTTATATTAA

Upstream 100 bases:

>100_bases
GGTGATAAATTAACAGAAATAAATGTTACAAGTCCAACATGTATTTGTGAAATTGAAGAAAAGAAAAATATTTCTATTAC
AGGTATTTTAATCGATTATA

Downstream 100 bases:

>100_bases
TTCTTTAATACATTCAAATTAATGATAAAACATGAACAATATTAATATCAATATTAAAATTATTAAAAAAAAAATTCAAT
ATTTTTTAAAGAAAAATAAC

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MKIKYINRDQKMIVIAFDFGLKNIGVAVGENILKKGRALNKLSAKNGSPDWNNIKNLLKIWQPKFLVVGLPLNIDGTRQD
ITKKAEKFAFLLKYKFNIFVYLHDERLSTKEAKSLIFKKNGFKVLKKEKIHSVAAVIILESWFNQNLY

Sequences:

>Translated_148_residues
MKIKYINRDQKMIVIAFDFGLKNIGVAVGENILKKGRALNKLSAKNGSPDWNNIKNLLKIWQPKFLVVGLPLNIDGTRQD
ITKKAEKFAFLLKYKFNIFVYLHDERLSTKEAKSLIFKKNGFKVLKKEKIHSVAAVIILESWFNQNLY
>Mature_148_residues
MKIKYINRDQKMIVIAFDFGLKNIGVAVGENILKKGRALNKLSAKNGSPDWNNIKNLLKIWQPKFLVVGLPLNIDGTRQD
ITKKAEKFAFLLKYKFNIFVYLHDERLSTKEAKSLIFKKNGFKVLKKEKIHSVAAVIILESWFNQNLY

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=133, Percent_Identity=53.3834586466165, Blast_Score=154, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 17127; Mature: 17127

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKYINRDQKMIVIAFDFGLKNIGVAVGENILKKGRALNKLSAKNGSPDWNNIKNLLKI
CEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHH
WQPKFLVVGLPLNIDGTRQDITKKAEKFAFLLKYKFNIFVYLHDERLSTKEAKSLIFKKN
CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHEEEEEEEEEEEECCCCCHHHHHHHHHCCC
GFKVLKKEKIHSVAAVIILESWFNQNLY
CCHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKIKYINRDQKMIVIAFDFGLKNIGVAVGENILKKGRALNKLSAKNGSPDWNNIKNLLKI
CEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHH
WQPKFLVVGLPLNIDGTRQDITKKAEKFAFLLKYKFNIFVYLHDERLSTKEAKSLIFKKN
CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHEEEEEEEEEEEECCCCCHHHHHHHHHCCC
GFKVLKKEKIHSVAAVIILESWFNQNLY
CCHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12089438 [H]