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The map label for this gene is yggS [C]

Identifier: 21672794

GI number: 21672794

Start: 586163

End: 586852

Strand: Direct

Name: yggS [C]

Synonym: BUsg531

Alternate gene names: 21672794

Gene position: 586163-586852 (Clockwise)

Preceding gene: 30410827

Following gene: 21672795

Centisome position: 91.38

GC content: 21.3

Gene sequence:

>690_bases
ATGAACAATATTAATATCAATATTAAAATTATTAAAAAAAAAATTCAATATTTTTTAAAGAAAAATAACTATCCTTTAAA
AAAAATAAAAATAATCGCAGTGAGCAAAAACCAAGGAATTGATAAAATAAAATTAGCAATATCATCTGGAATACACGAAT
TTGGAGAAAATTACGTTCAAGAAGGAATTGATAAAATTCAAAAATTAAAAAAATATCAAAATATTATTTGGCATTTTATT
GGAAAAGTTCAATCAAATAAAACAAAAATTATTGCAGAAAATTTCGATTGGTGTCAAACTATAGACCGCGAAAAAATCGC
AATTCTACTTAATAAATATAGAGAAAAAAAATCATTTCCAATGAATGTCTTAATGCAAATAAACATCTCTAATGAAGTAA
CTAAAAATGGCATATGCATAAAAAATTATAAAAAATTAGCAAAAACTATTTCTTTAATGCCTAATTTAAATTTTCGAGGA
ATTATGATGATGCCTGAAGTAGAAAAAAAAATGATAAAACAAAATGATAATTATAAAAATGGAAACTTTATTTTTAATGA
ATTAAAAAAAGAATACCAGTCAATTGATACTTTATCATTAGGTACAAGTTTTGATATAGAAAATGCTTTACTTTTTCACA
GTAATATGATTAGAATTGGACGTTTTATTTTTAAAAATCAAGTTAGATAA

Upstream 100 bases:

>100_bases
AAAGAAAAAATACATTCTGTTGCTGCTGTAATTATATTAGAAAGTTGGTTTAATCAAAATTTATATTAATTCTTTAATAC
ATTCAAATTAATGATAAAAC

Downstream 100 bases:

>100_bases
TATGTTAAATATTTATTAAAATACTACTATGTTTAAACTTCCACCTATTAGCTTATATATCCATATTCCTTGGTGTATAA
AAAAATGTGGATATTGTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MNNININIKIIKKKIQYFLKKNNYPLKKIKIIAVSKNQGIDKIKLAISSGIHEFGENYVQEGIDKIQKLKKYQNIIWHFI
GKVQSNKTKIIAENFDWCQTIDREKIAILLNKYREKKSFPMNVLMQINISNEVTKNGICIKNYKKLAKTISLMPNLNFRG
IMMMPEVEKKMIKQNDNYKNGNFIFNELKKEYQSIDTLSLGTSFDIENALLFHSNMIRIGRFIFKNQVR

Sequences:

>Translated_229_residues
MNNININIKIIKKKIQYFLKKNNYPLKKIKIIAVSKNQGIDKIKLAISSGIHEFGENYVQEGIDKIQKLKKYQNIIWHFI
GKVQSNKTKIIAENFDWCQTIDREKIAILLNKYREKKSFPMNVLMQINISNEVTKNGICIKNYKKLAKTISLMPNLNFRG
IMMMPEVEKKMIKQNDNYKNGNFIFNELKKEYQSIDTLSLGTSFDIENALLFHSNMIRIGRFIFKNQVR
>Mature_229_residues
MNNININIKIIKKKIQYFLKKNNYPLKKIKIIAVSKNQGIDKIKLAISSGIHEFGENYVQEGIDKIQKLKKYQNIIWHFI
GKVQSNKTKIIAENFDWCQTIDREKIAILLNKYREKKSFPMNVLMQINISNEVTKNGICIKNYKKLAKTISLMPNLNFRG
IMMMPEVEKKMIKQNDNYKNGNFIFNELKKEYQSIDTLSLGTSFDIENALLFHSNMIRIGRFIFKNQVR

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family

Homologues:

Organism=Homo sapiens, GI6005842, Length=236, Percent_Identity=29.2372881355932, Blast_Score=85, Evalue=6e-17,
Organism=Escherichia coli, GI1789321, Length=226, Percent_Identity=42.4778761061947, Blast_Score=199, Evalue=2e-52,
Organism=Caenorhabditis elegans, GI17533025, Length=215, Percent_Identity=35.8139534883721, Blast_Score=91, Evalue=4e-19,
Organism=Saccharomyces cerevisiae, GI6319435, Length=222, Percent_Identity=32.4324324324324, Blast_Score=73, Evalue=3e-14,
Organism=Drosophila melanogaster, GI45550861, Length=248, Percent_Identity=33.4677419354839, Blast_Score=94, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y531_BUCAP (Q8K929)

Other databases:

- EMBL:   AE013218
- RefSeq:   NP_660861.1
- ProteinModelPortal:   Q8K929
- SMR:   Q8K929
- EnsemblBacteria:   EBBUCT00000000126
- GeneID:   1005583
- GenomeReviews:   AE013218_GR
- KEGG:   bas:BUsg531
- GeneTree:   EBGT00050000007924
- HOGENOM:   HBG289671
- OMA:   VCIEVNI
- ProtClustDB:   CLSK382631
- BioCyc:   BAPH198804:BUSG531-MONOMER
- InterPro:   IPR001608
- InterPro:   IPR011078
- PANTHER:   PTHR10146
- PIRSF:   PIRSF004848
- TIGRFAMs:   TIGR00044

Pfam domain/function: PF01168 Ala_racemase_N

EC number: NA

Molecular weight: Translated: 26944; Mature: 26944

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNININIKIIKKKIQYFLKKNNYPLKKIKIIAVSKNQGIDKIKLAISSGIHEFGENYVQ
CCCEEEEEEHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
EGIDKIQKLKKYQNIIWHFIGKVQSNKTKIIAENFDWCQTIDREKIAILLNKYREKKSFP
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCCHHHHHHHHHHHHHHCCCC
MNVLMQINISNEVTKNGICIKNYKKLAKTISLMPNLNFRGIMMMPEVEKKMIKQNDNYKN
EEEEEEEECCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHCCCCCCC
GNFIFNELKKEYQSIDTLSLGTSFDIENALLFHSNMIRIGRFIFKNQVR
CCHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNNININIKIIKKKIQYFLKKNNYPLKKIKIIAVSKNQGIDKIKLAISSGIHEFGENYVQ
CCCEEEEEEHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
EGIDKIQKLKKYQNIIWHFIGKVQSNKTKIIAENFDWCQTIDREKIAILLNKYREKKSFP
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCCHHHHHHHHHHHHHHCCCC
MNVLMQINISNEVTKNGICIKNYKKLAKTISLMPNLNFRGIMMMPEVEKKMIKQNDNYKN
EEEEEEEECCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHCCCCCCC
GNFIFNELKKEYQSIDTLSLGTSFDIENALLFHSNMIRIGRFIFKNQVR
CCHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12089438