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The map label for this gene is rpe

Identifier: 21672783

GI number: 21672783

Start: 571834

End: 572520

Strand: Reverse

Name: rpe

Synonym: BUsg518

Alternate gene names: 21672783

Gene position: 572520-571834 (Counterclockwise)

Preceding gene: 21672784

Following gene: 21672782

Centisome position: 89.25

GC content: 29.55

Gene sequence:

>687_bases
ATGAAAAAGTTTTTTTTAGCGTCTTCAATTTTATCTGCTGATTTTGCTCGTTTAGGAGAAGATACAAAAAAAGCTATAGA
TGCAGGTAGTGATTGGATACATTTTGATGTAATGGATAATCATTATGTTCCAAATTTAACAATGGGTCCTATGATTTTAA
AAGCTTTGCGAAATTATAATATTACTGTCCCCATTGATGTTCACTTGATGGTGAAACCAGTAGATAATTTAATTCCTCAA
TTCGCTGAAGCCGGAGCAGATTTTATTACCTTTCATCCAGAGTCAACAGATCATATTGATCGTACCTTAAATCTAATTAA
AGAATGCGGATGTAAAGCAGGTTTAGCTTTGAATCCTGCGACTTCTCTTAATTTTCTCGATTATGTAATGGAAAAATTAG
ATTTAATTTTATTAATGTCAGTTAATCCTGGATTTGGTAATCAATCATTTTTACCTACTTCGTTTAATAAATTACGTGAA
GTTCGCAAAAAAATTGAATTGAATTCATCAAACATTCTTTTAGAAGTTGACGGAGGAGTTAAATTAGAAAATATTTCTGA
AGTAGCTTTTTCAGGAGCAAATGTTTTTGTGATTGGTTCTGGGATTTTTGGATATACTGATTATAATGTTATTATAAAAA
AGATACGTAAAAAATTAAAAAACGTATATTCAACTTCTATTCATTGA

Upstream 100 bases:

>100_bases
TTTCATGAAAAACAAAAAAATATTTACTAAGAAGATTTTTTATTTAAATTTTTTTAGTATTTTTTATAAAATTATTTCAA
TTAAATGTAGGAAAATGAAA

Downstream 100 bases:

>100_bases
TTTTTTTTATATTTTTAGGATCATATAATATGATTAATTCTAAACCAATACTATTCAGTGCCATACAGCCTTCCGGAAAC
TTAACTATTGGAAATTACAT

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MKKFFLASSILSADFARLGEDTKKAIDAGSDWIHFDVMDNHYVPNLTMGPMILKALRNYNITVPIDVHLMVKPVDNLIPQ
FAEAGADFITFHPESTDHIDRTLNLIKECGCKAGLALNPATSLNFLDYVMEKLDLILLMSVNPGFGNQSFLPTSFNKLRE
VRKKIELNSSNILLEVDGGVKLENISEVAFSGANVFVIGSGIFGYTDYNVIIKKIRKKLKNVYSTSIH

Sequences:

>Translated_228_residues
MKKFFLASSILSADFARLGEDTKKAIDAGSDWIHFDVMDNHYVPNLTMGPMILKALRNYNITVPIDVHLMVKPVDNLIPQ
FAEAGADFITFHPESTDHIDRTLNLIKECGCKAGLALNPATSLNFLDYVMEKLDLILLMSVNPGFGNQSFLPTSFNKLRE
VRKKIELNSSNILLEVDGGVKLENISEVAFSGANVFVIGSGIFGYTDYNVIIKKIRKKLKNVYSTSIH
>Mature_228_residues
MKKFFLASSILSADFARLGEDTKKAIDAGSDWIHFDVMDNHYVPNLTMGPMILKALRNYNITVPIDVHLMVKPVDNLIPQ
FAEAGADFITFHPESTDHIDRTLNLIKECGCKAGLALNPATSLNFLDYVMEKLDLILLMSVNPGFGNQSFLPTSFNKLRE
VRKKIELNSSNILLEVDGGVKLENISEVAFSGANVFVIGSGIFGYTDYNVIIKKIRKKLKNVYSTSIH

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family

Homologues:

Organism=Homo sapiens, GI40385883, Length=212, Percent_Identity=36.3207547169811, Blast_Score=144, Evalue=6e-35,
Organism=Homo sapiens, GI219879828, Length=212, Percent_Identity=35.377358490566, Blast_Score=137, Evalue=9e-33,
Organism=Homo sapiens, GI24307923, Length=168, Percent_Identity=30.952380952381, Blast_Score=86, Evalue=4e-17,
Organism=Escherichia coli, GI1789788, Length=222, Percent_Identity=66.6666666666667, Blast_Score=323, Evalue=4e-90,
Organism=Escherichia coli, GI1790523, Length=204, Percent_Identity=36.2745098039216, Blast_Score=141, Evalue=3e-35,
Organism=Escherichia coli, GI1790754, Length=189, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17552948, Length=224, Percent_Identity=39.7321428571429, Blast_Score=159, Evalue=9e-40,
Organism=Saccharomyces cerevisiae, GI6322341, Length=231, Percent_Identity=37.6623376623377, Blast_Score=156, Evalue=2e-39,
Organism=Drosophila melanogaster, GI24586301, Length=211, Percent_Identity=37.914691943128, Blast_Score=157, Evalue=7e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPE_BUCAP (Q8K940)

Other databases:

- EMBL:   AE013218
- RefSeq:   NP_660850.1
- ProteinModelPortal:   Q8K940
- SMR:   Q8K940
- EnsemblBacteria:   EBBUCT00000000321
- GeneID:   1005655
- GenomeReviews:   AE013218_GR
- KEGG:   bas:BUsg518
- GeneTree:   EBGT00050000008185
- HOGENOM:   HBG571751
- OMA:   HIDRTLQ
- ProtClustDB:   CLSK316432
- BioCyc:   BAPH198804:BUSG518-MONOMER
- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR11749
- PIRSF:   PIRSF001461
- TIGRFAMs:   TIGR01163

Pfam domain/function: PF00834 Ribul_P_3_epim; SSF51366 RibP_bind_barrel

EC number: =5.1.3.1

Molecular weight: Translated: 25400; Mature: 25400

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFFLASSILSADFARLGEDTKKAIDAGSDWIHFDVMDNHYVPNLTMGPMILKALRNYN
CCCHHHHHHHHHHHHHHHCHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCC
ITVPIDVHLMVKPVDNLIPQFAEAGADFITFHPESTDHIDRTLNLIKECGCKAGLALNPA
EEEEEEEEEEECCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCEECCC
TSLNFLDYVMEKLDLILLMSVNPGFGNQSFLPTSFNKLREVRKKIELNSSNILLEVDGGV
CHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCE
KLENISEVAFSGANVFVIGSGIFGYTDYNVIIKKIRKKLKNVYSTSIH
EECHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKKFFLASSILSADFARLGEDTKKAIDAGSDWIHFDVMDNHYVPNLTMGPMILKALRNYN
CCCHHHHHHHHHHHHHHHCHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCC
ITVPIDVHLMVKPVDNLIPQFAEAGADFITFHPESTDHIDRTLNLIKECGCKAGLALNPA
EEEEEEEEEEECCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCEECCC
TSLNFLDYVMEKLDLILLMSVNPGFGNQSFLPTSFNKLREVRKKIELNSSNILLEVDGGV
CHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCE
KLENISEVAFSGANVFVIGSGIFGYTDYNVIIKKIRKKLKNVYSTSIH
EECHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12089438