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The map label for this gene is yccK

Identifier: 21672716

GI number: 21672716

Start: 513763

End: 514107

Strand: Direct

Name: yccK

Synonym: BUsg451

Alternate gene names: 21672716

Gene position: 513763-514107 (Clockwise)

Preceding gene: 30410822

Following gene: 21672722

Centisome position: 80.09

GC content: 24.06

Gene sequence:

>345_bases
ATGTTAAAAAATAATCATACAAAAAAATTATATGAAAAAATTGAAAAAGACACAGAAGGATATTTGAAAAAAGCTGCAGA
TTGGAGTATAGAATTAGCAAAAGAAATTGCAAAAAAAGAAAAAATAGTTTTGACCAATGATCATTGGACAGTCATAAATT
TTATAAGAAAATTCTATTTTAAATTTAATATAACACCATCTATGAGAATGTTAATTAAAAGCATAGAAAAAAAAATAGGT
CTAAAAAAAAGCAATAGTATTTATTTATTTAGACTTTTTCCTGAAGGACCAGCTAAACAAGCAAGTAAAATAGCTGGTAT
ACCAAAACCTTCACGATGTTTATAA

Upstream 100 bases:

>100_bases
ACACAAAAACTTAATGTAACTTGTAATTCTATAAAATTCATTTTATAATTTTTCATATTCAACTCAATTATTATTAATAA
TTTTATATCTTATATATATC

Downstream 100 bases:

>100_bases
AATTTAAAATATAAAATCTATAGATATTAAAAAATTAAATAATATAACTACTGCAATAGAATAATAAAATAATTTACTGG
AAAATTTTCTATCATCTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: tRNA 2-thiouridine synthesizing protein E

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MLKNNHTKKLYEKIEKDTEGYLKKAADWSIELAKEIAKKEKIVLTNDHWTVINFIRKFYFKFNITPSMRMLIKSIEKKIG
LKKSNSIYLFRLFPEGPAKQASKIAGIPKPSRCL

Sequences:

>Translated_114_residues
MLKNNHTKKLYEKIEKDTEGYLKKAADWSIELAKEIAKKEKIVLTNDHWTVINFIRKFYFKFNITPSMRMLIKSIEKKIG
LKKSNSIYLFRLFPEGPAKQASKIAGIPKPSRCL
>Mature_114_residues
MLKNNHTKKLYEKIEKDTEGYLKKAADWSIELAKEIAKKEKIVLTNDHWTVINFIRKFYFKFNITPSMRMLIKSIEKKIG
LKKSNSIYLFRLFPEGPAKQASKIAGIPKPSRCL

Specific function: Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Could accept sulfur from tusD

COG id: COG2920

COG function: function code P; Dissimilatory sulfite reductase (desulfoviridin), gamma subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dsrC/tusE family

Homologues:

Organism=Escherichia coli, GI87081811, Length=102, Percent_Identity=55.8823529411765, Blast_Score=131, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TUSE_BUCAP (Q8K998)

Other databases:

- EMBL:   AE013218
- RefSeq:   NP_660783.1
- ProteinModelPortal:   Q8K998
- SMR:   Q8K998
- EnsemblBacteria:   EBBUCT00000000198
- GeneID:   1005714
- GenomeReviews:   AE013218_GR
- KEGG:   bas:BUsg451
- GeneTree:   EBGT00050000007764
- HOGENOM:   HBG739529
- OMA:   YQIAPAV
- ProtClustDB:   CLSK316273
- BioCyc:   BAPH198804:BUSG451-MONOMER
- GO:   GO:0005737
- InterPro:   IPR007453
- Gene3D:   G3DSA:1.10.10.370
- TIGRFAMs:   TIGR03342

Pfam domain/function: PF04358 DsrC; SSF69721 DsrC

EC number: NA

Molecular weight: Translated: 13332; Mature: 13332

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: NA

Important sites: ACT_SITE 113-113

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKNNHTKKLYEKIEKDTEGYLKKAADWSIELAKEIAKKEKIVLTNDHWTVINFIRKFYF
CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHH
KFNITPSMRMLIKSIEKKIGLKKSNSIYLFRLFPEGPAKQASKIAGIPKPSRCL
HCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLKNNHTKKLYEKIEKDTEGYLKKAADWSIELAKEIAKKEKIVLTNDHWTVINFIRKFYF
CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHH
KFNITPSMRMLIKSIEKKIGLKKSNSIYLFRLFPEGPAKQASKIAGIPKPSRCL
HCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12089438