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The map label for this gene is ybeY [C]

Identifier: 21672692

GI number: 21672692

Start: 483696

End: 484013

Strand: Direct

Name: ybeY [C]

Synonym: BUsg427

Alternate gene names: 21672692

Gene position: 483696-484013 (Clockwise)

Preceding gene: 21672691

Following gene: 21672693

Centisome position: 75.41

GC content: 18.87

Gene sequence:

>318_bases
ATGAAAAATATAAATTTAAAATATAGAGGAAAAAATAAATCAACAAATATTTTATCTTTTAAATTTGATTTGTTTATAAA
TAAAAATCAAACATTGTTAGGAGATCTTGTTTTATGTAAAAAAATAATTGAAAAAGAATCGTTAAAATATCAAAAAACAT
TAGAATCACGTTGGGCACATATGATAATACATGGAACACTTCATCTTTTAGGATATGATCATAAAAACAAAAAAGAAAAA
AAAATCATGGAAAAAATAGAAAACAAAATAATGTTATTTTTAAATTATGAAAAACCATATTTTATGAAAAGTTCGTAA

Upstream 100 bases:

>100_bases
ATATACCAAAAAAATATATTTTTGAAAAATGGATAAAAAAAGTCTTATATAAAAAAAAAATGTTAATTTAATTAACATTA
GAATTGTTGACGAAAGAGAA

Downstream 100 bases:

>100_bases
TTTTTTTATAAAAAATATTTTAACCTATCTCTTTCTACCTATAGAATAAGAAAGATATATTTTTAAAAATAGATAATCAT
AATACTATGAGTAACAAAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 105; Mature: 105

Protein sequence:

>105_residues
MKNINLKYRGKNKSTNILSFKFDLFINKNQTLLGDLVLCKKIIEKESLKYQKTLESRWAHMIIHGTLHLLGYDHKNKKEK
KIMEKIENKIMLFLNYEKPYFMKSS

Sequences:

>Translated_105_residues
MKNINLKYRGKNKSTNILSFKFDLFINKNQTLLGDLVLCKKIIEKESLKYQKTLESRWAHMIIHGTLHLLGYDHKNKKEK
KIMEKIENKIMLFLNYEKPYFMKSS
>Mature_105_residues
MKNINLKYRGKNKSTNILSFKFDLFINKNQTLLGDLVLCKKIIEKESLKYQKTLESRWAHMIIHGTLHLLGYDHKNKKEK
KIMEKIENKIMLFLNYEKPYFMKSS

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=101, Percent_Identity=51.4851485148515, Blast_Score=118, Evalue=6e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_BUCAP (Q8K9C1)

Other databases:

- EMBL:   AE013218
- RefSeq:   NP_660759.1
- ProteinModelPortal:   Q8K9C1
- SMR:   Q8K9C1
- EnsemblBacteria:   EBBUCT00000000237
- GeneID:   1005736
- GenomeReviews:   AE013218_GR
- KEGG:   bas:BUsg427
- GeneTree:   EBGT00050000007961
- HOGENOM:   HBG734136
- OMA:   FTDPYKE
- ProtClustDB:   CLSK316197
- BioCyc:   BAPH198804:BUSG427-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 12610; Mature: 12610

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNINLKYRGKNKSTNILSFKFDLFINKNQTLLGDLVLCKKIIEKESLKYQKTLESRWAH
CCCCCEEECCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MIIHGTLHLLGYDHKNKKEKKIMEKIENKIMLFLNYEKPYFMKSS
HHHEEEEEEEECCCCCCHHHHHHHHHCCEEEEEEECCCCEEEECC
>Mature Secondary Structure
MKNINLKYRGKNKSTNILSFKFDLFINKNQTLLGDLVLCKKIIEKESLKYQKTLESRWAH
CCCCCEEECCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MIIHGTLHLLGYDHKNKKEKKIMEKIENKIMLFLNYEKPYFMKSS
HHHEEEEEEEECCCCCCHHHHHHHHHCCEEEEEEECCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12089438