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The map label for this gene is ygcF [C]

Identifier: 21672674

GI number: 21672674

Start: 454946

End: 455605

Strand: Direct

Name: ygcF [C]

Synonym: BUsg401

Alternate gene names: 21672674

Gene position: 454946-455605 (Clockwise)

Preceding gene: 21672673

Following gene: 21672682

Centisome position: 70.92

GC content: 22.88

Gene sequence:

>660_bases
ATGTATTATCCAATTAATGAAATATTTCAAACTATACAAGGTGAGGGATACTATACTGGAACACCATCAATCTTTATTAG
ATTACAAGGATGTCCAGTACATTGCAAATGGTGTGATACTAAATATACATGGAAGTGTAATAATGAAGATCAAATTTCTT
ACGAAAAAATAATAATGAAAAAAAAATCTAATAGAAAATGGAGTTATATGAATGTTAAGGAAATTATTCTGATAATAAAA
ATTAAAAAATGGACAGCTAAACATATTGTTATTACTGGTGGTGAACCATGTTTATATAATCTTTTAGAAATTACAAAAGA
ACTAGAAAAAGAAGATTATAAATGTCAAATAGAAACAAGTGGGACTGAATTAATTAAATGTTCTCTAAATACTTGGATTA
CACTTTCTCCTAAAATTAATAAAAAAACACTAAAAACATCAATATTGCGCTCTAATGAAATTAAATACCCTGTTTTAAAA
AAGGAAGATTTATTTTACCTAAATAGTATTTTAAAAAAAATAAAAAATAAAAAACATAATTTAATTTTTCTACAACCAAT
TAGTCAAAATGAAGAAGCATTAAATATTTGTATTAAAACGTGTATAATAAAAAATTGGAGATTATCAGTACAAATACATA
AATATCTTAAAATTCGATAA

Upstream 100 bases:

>100_bases
TAAAGATAAGATATATTCTTAAAGAGAATCAGGTATTTTAAAATATATGCCTGTTTCTCATTAACATAAAATACTAATCA
TTTTTTATGAGTCTAATTAT

Downstream 100 bases:

>100_bases
GTTGTGTTTATAATCTTAGAAACCTTGATAAATACATCCTGATGTGCATGTTTCTTTAATTATAATAGTATTTAAAATAG
ACAATTTAGGTTTTAAACGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MYYPINEIFQTIQGEGYYTGTPSIFIRLQGCPVHCKWCDTKYTWKCNNEDQISYEKIIMKKKSNRKWSYMNVKEIILIIK
IKKWTAKHIVITGGEPCLYNLLEITKELEKEDYKCQIETSGTELIKCSLNTWITLSPKINKKTLKTSILRSNEIKYPVLK
KEDLFYLNSILKKIKNKKHNLIFLQPISQNEEALNICIKTCIIKNWRLSVQIHKYLKIR

Sequences:

>Translated_219_residues
MYYPINEIFQTIQGEGYYTGTPSIFIRLQGCPVHCKWCDTKYTWKCNNEDQISYEKIIMKKKSNRKWSYMNVKEIILIIK
IKKWTAKHIVITGGEPCLYNLLEITKELEKEDYKCQIETSGTELIKCSLNTWITLSPKINKKTLKTSILRSNEIKYPVLK
KEDLFYLNSILKKIKNKKHNLIFLQPISQNEEALNICIKTCIIKNWRLSVQIHKYLKIR
>Mature_219_residues
MYYPINEIFQTIQGEGYYTGTPSIFIRLQGCPVHCKWCDTKYTWKCNNEDQISYEKIIMKKKSNRKWSYMNVKEIILIIK
IKKWTAKHIVITGGEPCLYNLLEITKELEKEDYKCQIETSGTELIKCSLNTWITLSPKINKKTLKTSILRSNEIKYPVLK
KEDLFYLNSILKKIKNKKHNLIFLQPISQNEEALNICIKTCIIKNWRLSVQIHKYLKIR

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygcF and H.influenzae HI_1189

Homologues:

Organism=Escherichia coli, GI1789139, Length=222, Percent_Identity=50.4504504504504, Blast_Score=255, Evalue=2e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y401_BUCAP (Q8K9D9)

Other databases:

- EMBL:   AE013218
- RefSeq:   NP_660741.1
- EnsemblBacteria:   EBBUCT00000000400
- GeneID:   1005759
- GenomeReviews:   AE013218_GR
- KEGG:   bas:BUsg401
- HOGENOM:   HBG507714
- OMA:   TICLQPI
- ProtClustDB:   CLSK874339
- BioCyc:   BAPH198804:BUSG401-MONOMER
- InterPro:   IPR013785
- InterPro:   IPR007197
- Gene3D:   G3DSA:3.20.20.70

Pfam domain/function: PF04055 Radical_SAM

EC number: NA

Molecular weight: Translated: 25989; Mature: 25989

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYYPINEIFQTIQGEGYYTGTPSIFIRLQGCPVHCKWCDTKYTWKCNNEDQISYEKIIMK
CCCCHHHHHHHHCCCCEEECCCEEEEEEECCEEEEEEECCEEEEEECCCCCCCHHHHEEE
KKSNRKWSYMNVKEIILIIKIKKWTAKHIVITGGEPCLYNLLEITKELEKEDYKCQIETS
CCCCCCEEEECHHHEEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECC
GTELIKCSLNTWITLSPKINKKTLKTSILRSNEIKYPVLKKEDLFYLNSILKKIKNKKHN
CCEEEEEECCEEEEECCCCCHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHCCCCCC
LIFLQPISQNEEALNICIKTCIIKNWRLSVQIHKYLKIR
EEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEEEECC
>Mature Secondary Structure
MYYPINEIFQTIQGEGYYTGTPSIFIRLQGCPVHCKWCDTKYTWKCNNEDQISYEKIIMK
CCCCHHHHHHHHCCCCEEECCCEEEEEEECCEEEEEEECCEEEEEECCCCCCCHHHHEEE
KKSNRKWSYMNVKEIILIIKIKKWTAKHIVITGGEPCLYNLLEITKELEKEDYKCQIETS
CCCCCCEEEECHHHEEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECC
GTELIKCSLNTWITLSPKINKKTLKTSILRSNEIKYPVLKKEDLFYLNSILKKIKNKKHN
CCEEEEEECCEEEEECCCCCHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHCCCCCC
LIFLQPISQNEEALNICIKTCIIKNWRLSVQIHKYLKIR
EEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12089438